Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28435

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28430 and ABID97_RS28435 are separated by 4 nucleotidesABID97_RS28435 and ABID97_RS28440 are separated by 187 nucleotides ABID97_RS28430: ABID97_RS28430 - thiolase family protein, at 605,788 to 606,924 _RS28430 ABID97_RS28435: ABID97_RS28435 - OB-fold domain-containing protein, at 606,929 to 607,285 _RS28435 ABID97_RS28440: ABID97_RS28440 - PrpF domain-containing protein, at 607,473 to 608,618 _RS28440 Position (kb) 606 607 608Strain fitness (log2 ratio) -1 0 1at 606.081 kb on - strand, within ABID97_RS28430at 606.454 kb on - strand, within ABID97_RS28430at 607.120 kb on - strand, within ABID97_RS28435at 607.405 kb on + strandat 607.406 kb on - strandat 607.463 kb on + strandat 607.487 kb on - strandat 607.704 kb on + strand, within ABID97_RS28440at 608.164 kb on - strand, within ABID97_RS28440

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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606,081 - ABID97_RS28430 0.26 +0.0
606,454 - ABID97_RS28430 0.59 -0.1
607,120 - ABID97_RS28435 0.54 +0.0
607,405 + +0.5
607,406 - -0.2
607,463 + -0.8
607,487 - -0.8
607,704 + ABID97_RS28440 0.20 -0.8
608,164 - ABID97_RS28440 0.60 -1.1

Or see this region's nucleotide sequence