Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26685

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26680 and ABID97_RS26685 are separated by 31 nucleotidesABID97_RS26685 and ABID97_RS26690 are separated by 142 nucleotides ABID97_RS26680: ABID97_RS26680 - AAA family ATPase, at 257,704 to 260,367 _RS26680 ABID97_RS26685: ABID97_RS26685 - LysR substrate-binding domain-containing protein, at 260,399 to 261,334 _RS26685 ABID97_RS26690: ABID97_RS26690 - tripartite tricarboxylate transporter substrate binding protein, at 261,477 to 262,490 _RS26690 Position (kb) 260 261 262Strain fitness (log2 ratio) -1 0 1at 260.008 kb on + strand, within ABID97_RS26680at 260.008 kb on + strand, within ABID97_RS26680at 260.170 kb on + strandat 260.383 kb on - strandat 260.730 kb on + strand, within ABID97_RS26685at 261.126 kb on + strand, within ABID97_RS26685at 261.303 kb on + strandat 261.764 kb on + strand, within ABID97_RS26690at 261.993 kb on + strand, within ABID97_RS26690at 262.053 kb on + strand, within ABID97_RS26690

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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260,008 + ABID97_RS26680 0.86 +0.1
260,008 + ABID97_RS26680 0.86 -1.1
260,170 + -0.2
260,383 - +0.7
260,730 + ABID97_RS26685 0.35 +0.5
261,126 + ABID97_RS26685 0.78 +0.4
261,303 + +0.1
261,764 + ABID97_RS26690 0.28 -0.4
261,993 + ABID97_RS26690 0.51 +0.2
262,053 + ABID97_RS26690 0.57 +0.6

Or see this region's nucleotide sequence