Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26415 and ABID97_RS26420 are separated by 92 nucleotides ABID97_RS26420 and ABID97_RS26425 are separated by 242 nucleotides ABID97_RS26425 and ABID97_RS26430 are separated by 31 nucleotides ABID97_RS26430 and ABID97_RS26435 overlap by 11 nucleotides
ABID97_RS26415: ABID97_RS26415 - copper oxidase, at 202,064 to 203,479
_RS26415
ABID97_RS26420: ABID97_RS26420 - copper-binding protein, at 203,572 to 203,886
_RS26420
ABID97_RS26425: ABID97_RS26425 - ABC transporter ATP-binding protein, at 204,129 to 204,629
_RS26425
ABID97_RS26430: ABID97_RS26430 - SDR family oxidoreductase, at 204,661 to 205,362
_RS26430
ABID97_RS26435: ABID97_RS26435 - tripartite tricarboxylate transporter substrate binding protein, at 205,352 to 206,323
_RS26435
Position (kb) 204
205 Strain fitness (log2 ratio) -1
0
1
2 at 203.133 kb on - strand, within ABID97_RS26415 at 203.298 kb on - strand, within ABID97_RS26415 at 203.298 kb on - strand, within ABID97_RS26415 at 203.524 kb on - strand at 204.128 kb on + strand at 204.129 kb on - strand at 204.199 kb on - strand, within ABID97_RS26425 at 204.438 kb on + strand, within ABID97_RS26425 at 204.439 kb on - strand, within ABID97_RS26425 at 204.465 kb on + strand, within ABID97_RS26425 at 204.465 kb on + strand, within ABID97_RS26425 at 204.554 kb on + strand, within ABID97_RS26425 at 205.576 kb on - strand, within ABID97_RS26435
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 203,133 - ABID97_RS26415 0.75 -0.8 203,298 - ABID97_RS26415 0.87 -0.2 203,298 - ABID97_RS26415 0.87 +0.2 203,524 - -0.0 204,128 + +1.8 204,129 - +0.4 204,199 - ABID97_RS26425 0.14 -0.1 204,438 + ABID97_RS26425 0.62 -0.1 204,439 - ABID97_RS26425 0.62 -0.2 204,465 + ABID97_RS26425 0.67 +1.8 204,465 + ABID97_RS26425 0.67 -0.6 204,554 + ABID97_RS26425 0.85 +0.5 205,576 - ABID97_RS26435 0.23 +0.2
Or see this region's nucleotide sequence