Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25355

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25345 and ABID97_RS25350 are separated by 90 nucleotidesABID97_RS25350 and ABID97_RS25355 are separated by 109 nucleotidesABID97_RS25355 and ABID97_RS25360 are separated by 157 nucleotides ABID97_RS25345: ABID97_RS25345 - transporter associated domain-containing protein, at 5,252,061 to 5,252,939 _RS25345 ABID97_RS25350: ABID97_RS25350 - GNAT family N-acetyltransferase, at 5,253,030 to 5,253,764 _RS25350 ABID97_RS25355: ABID97_RS25355 - Lrp/AsnC family transcriptional regulator, at 5,253,874 to 5,254,347 _RS25355 ABID97_RS25360: ABID97_RS25360 - 4-hydroxyphenylpyruvate dioxygenase, at 5,254,505 to 5,255,632 _RS25360 Position (kb) 5253 5254 5255Strain fitness (log2 ratio) -2 -1 0 1 2at 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.952 kb on - strandat 5252.952 kb on - strandat 5252.952 kb on - strandat 5253.145 kb on + strand, within ABID97_RS25350at 5253.146 kb on - strand, within ABID97_RS25350at 5253.146 kb on - strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.478 kb on + strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.479 kb on - strand, within ABID97_RS25350at 5253.523 kb on + strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.554 kb on - strand, within ABID97_RS25350at 5253.568 kb on + strand, within ABID97_RS25350at 5253.773 kb on + strandat 5253.773 kb on + strandat 5253.773 kb on + strandat 5253.774 kb on - strandat 5253.775 kb on + strandat 5253.776 kb on - strandat 5253.825 kb on + strandat 5253.825 kb on + strandat 5253.826 kb on - strandat 5253.875 kb on + strandat 5253.876 kb on - strandat 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.017 kb on - strand, within ABID97_RS25355at 5254.017 kb on - strand, within ABID97_RS25355at 5254.074 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.143 kb on - strand, within ABID97_RS25355at 5254.190 kb on + strand, within ABID97_RS25355at 5254.190 kb on + strand, within ABID97_RS25355at 5254.191 kb on - strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.281 kb on - strand, within ABID97_RS25355at 5254.427 kb on + strandat 5254.428 kb on - strandat 5254.580 kb on + strandat 5254.580 kb on + strandat 5254.580 kb on + strandat 5254.581 kb on - strandat 5254.673 kb on + strand, within ABID97_RS25360at 5254.673 kb on + strand, within ABID97_RS25360at 5254.674 kb on - strand, within ABID97_RS25360at 5254.674 kb on - strand, within ABID97_RS25360at 5254.800 kb on - strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.968 kb on - strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.069 kb on + strand, within ABID97_RS25360at 5255.069 kb on + strand, within ABID97_RS25360at 5255.070 kb on - strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.315 kb on + strand, within ABID97_RS25360at 5255.315 kb on + strand, within ABID97_RS25360at 5255.316 kb on - strand, within ABID97_RS25360

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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5,252,951 + -1.1
5,252,951 + -0.8
5,252,951 + +1.1
5,252,951 + -1.2
5,252,952 - +0.8
5,252,952 - -0.5
5,252,952 - -0.6
5,253,145 + ABID97_RS25350 0.16 -0.1
5,253,146 - ABID97_RS25350 0.16 +0.2
5,253,146 - ABID97_RS25350 0.16 -0.3
5,253,478 + ABID97_RS25350 0.61 -1.2
5,253,478 + ABID97_RS25350 0.61 -0.6
5,253,478 + ABID97_RS25350 0.61 -0.8
5,253,478 + ABID97_RS25350 0.61 -0.2
5,253,478 + ABID97_RS25350 0.61 -1.6
5,253,478 + ABID97_RS25350 0.61 -0.2
5,253,479 - ABID97_RS25350 0.61 -0.1
5,253,479 - ABID97_RS25350 0.61 +1.8
5,253,479 - ABID97_RS25350 0.61 +0.6
5,253,479 - ABID97_RS25350 0.61 +0.5
5,253,479 - ABID97_RS25350 0.61 -0.5
5,253,479 - ABID97_RS25350 0.61 -0.1
5,253,479 - ABID97_RS25350 0.61 -0.4
5,253,523 + ABID97_RS25350 0.67 -0.4
5,253,524 - ABID97_RS25350 0.67 +0.4
5,253,524 - ABID97_RS25350 0.67 -0.0
5,253,524 - ABID97_RS25350 0.67 -0.0
5,253,554 - ABID97_RS25350 0.71 +0.5
5,253,568 + ABID97_RS25350 0.73 -0.3
5,253,773 + +0.1
5,253,773 + -0.4
5,253,773 + +0.8
5,253,774 - +0.4
5,253,775 + +1.3
5,253,776 - +0.8
5,253,825 + -0.0
5,253,825 + +0.2
5,253,826 - +0.3
5,253,875 + +0.2
5,253,876 - +0.4
5,253,980 + ABID97_RS25355 0.22 -0.4
5,253,980 + ABID97_RS25355 0.22 -0.3
5,253,980 + ABID97_RS25355 0.22 +1.6
5,253,980 + ABID97_RS25355 0.22 +0.4
5,253,980 + ABID97_RS25355 0.22 +0.8
5,253,981 - ABID97_RS25355 0.23 -0.1
5,253,981 - ABID97_RS25355 0.23 +0.3
5,253,981 - ABID97_RS25355 0.23 -0.6
5,254,016 + ABID97_RS25355 0.30 -0.2
5,254,016 + ABID97_RS25355 0.30 +0.1
5,254,016 + ABID97_RS25355 0.30 -0.1
5,254,017 - ABID97_RS25355 0.30 -0.3
5,254,017 - ABID97_RS25355 0.30 +1.1
5,254,074 + ABID97_RS25355 0.42 -0.3
5,254,142 + ABID97_RS25355 0.57 -0.1
5,254,142 + ABID97_RS25355 0.57 +0.9
5,254,142 + ABID97_RS25355 0.57 +0.1
5,254,142 + ABID97_RS25355 0.57 +0.3
5,254,143 - ABID97_RS25355 0.57 -0.2
5,254,190 + ABID97_RS25355 0.67 -0.0
5,254,190 + ABID97_RS25355 0.67 +0.2
5,254,191 - ABID97_RS25355 0.67 -1.4
5,254,280 + ABID97_RS25355 0.86 +0.2
5,254,280 + ABID97_RS25355 0.86 +0.8
5,254,280 + ABID97_RS25355 0.86 +0.6
5,254,280 + ABID97_RS25355 0.86 -0.6
5,254,280 + ABID97_RS25355 0.86 +0.2
5,254,281 - ABID97_RS25355 0.86 +0.4
5,254,427 + -0.4
5,254,428 - -0.0
5,254,580 + -1.9
5,254,580 + -0.4
5,254,580 + -1.9
5,254,581 - +0.6
5,254,673 + ABID97_RS25360 0.15 +0.0
5,254,673 + ABID97_RS25360 0.15 -0.2
5,254,674 - ABID97_RS25360 0.15 -0.1
5,254,674 - ABID97_RS25360 0.15 +0.3
5,254,800 - ABID97_RS25360 0.26 -0.2
5,254,901 + ABID97_RS25360 0.35 -1.2
5,254,901 + ABID97_RS25360 0.35 -0.9
5,254,901 + ABID97_RS25360 0.35 +1.8
5,254,901 + ABID97_RS25360 0.35 -0.7
5,254,902 - ABID97_RS25360 0.35 +0.6
5,254,902 - ABID97_RS25360 0.35 -0.6
5,254,902 - ABID97_RS25360 0.35 -1.0
5,254,902 - ABID97_RS25360 0.35 -1.7
5,254,902 - ABID97_RS25360 0.35 -0.4
5,254,902 - ABID97_RS25360 0.35 -0.5
5,254,902 - ABID97_RS25360 0.35 +0.2
5,254,967 + ABID97_RS25360 0.41 -0.8
5,254,967 + ABID97_RS25360 0.41 -0.4
5,254,967 + ABID97_RS25360 0.41 +0.1
5,254,967 + ABID97_RS25360 0.41 +0.0
5,254,967 + ABID97_RS25360 0.41 +0.4
5,254,968 - ABID97_RS25360 0.41 -0.1
5,255,042 + ABID97_RS25360 0.48 -0.5
5,255,042 + ABID97_RS25360 0.48 -0.3
5,255,042 + ABID97_RS25360 0.48 -0.2
5,255,043 - ABID97_RS25360 0.48 +0.8
5,255,043 - ABID97_RS25360 0.48 -0.8
5,255,043 - ABID97_RS25360 0.48 -0.0
5,255,043 - ABID97_RS25360 0.48 -1.0
5,255,069 + ABID97_RS25360 0.50 -0.0
5,255,069 + ABID97_RS25360 0.50 -0.3
5,255,070 - ABID97_RS25360 0.50 +0.1
5,255,135 + ABID97_RS25360 0.56 +0.6
5,255,135 + ABID97_RS25360 0.56 +0.7
5,255,135 + ABID97_RS25360 0.56 +1.1
5,255,135 + ABID97_RS25360 0.56 -0.3
5,255,135 + ABID97_RS25360 0.56 -0.0
5,255,135 + ABID97_RS25360 0.56 +0.8
5,255,135 + ABID97_RS25360 0.56 -0.3
5,255,136 - ABID97_RS25360 0.56 -0.0
5,255,136 - ABID97_RS25360 0.56 +0.8
5,255,136 - ABID97_RS25360 0.56 -1.5
5,255,136 - ABID97_RS25360 0.56 +1.2
5,255,136 - ABID97_RS25360 0.56 +0.2
5,255,136 - ABID97_RS25360 0.56 -0.6
5,255,136 - ABID97_RS25360 0.56 -1.2
5,255,255 + ABID97_RS25360 0.66 -0.8
5,255,255 + ABID97_RS25360 0.66 +1.6
5,255,255 + ABID97_RS25360 0.66 -1.0
5,255,256 - ABID97_RS25360 0.67 +0.5
5,255,256 - ABID97_RS25360 0.67 +0.5
5,255,256 - ABID97_RS25360 0.67 +0.6
5,255,256 - ABID97_RS25360 0.67 +0.7
5,255,267 + ABID97_RS25360 0.68 +0.6
5,255,267 + ABID97_RS25360 0.68 -0.3
5,255,267 + ABID97_RS25360 0.68 +2.0
5,255,267 + ABID97_RS25360 0.68 +0.0
5,255,268 - ABID97_RS25360 0.68 -0.3
5,255,268 - ABID97_RS25360 0.68 -0.2
5,255,268 - ABID97_RS25360 0.68 -0.1
5,255,268 - ABID97_RS25360 0.68 -0.2
5,255,315 + ABID97_RS25360 0.72 +0.3
5,255,315 + ABID97_RS25360 0.72 -1.6
5,255,316 - ABID97_RS25360 0.72 +0.2

Or see this region's nucleotide sequence