Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18850

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18845 and ABID97_RS18850 overlap by 13 nucleotidesABID97_RS18850 and ABID97_RS18855 overlap by 65 nucleotides ABID97_RS18845: ABID97_RS18845 - GMC family oxidoreductase N-terminal domain-containing protein, at 3,881,433 to 3,882,581 _RS18845 ABID97_RS18850: ABID97_RS18850 - GMC oxidoreductase, at 3,882,569 to 3,883,045 _RS18850 ABID97_RS18855: ABID97_RS18855 - GMC family oxidoreductase N-terminal domain-containing protein, at 3,882,981 to 3,884,633 _RS18855 Position (kb) 3882 3883 3884Strain fitness (log2 ratio) -1 0 1at 3881.661 kb on + strand, within ABID97_RS18845at 3881.760 kb on + strand, within ABID97_RS18845at 3881.761 kb on - strand, within ABID97_RS18845at 3881.896 kb on + strand, within ABID97_RS18845at 3881.896 kb on + strand, within ABID97_RS18845at 3881.897 kb on - strand, within ABID97_RS18845at 3881.897 kb on - strand, within ABID97_RS18845at 3881.994 kb on + strand, within ABID97_RS18845at 3882.072 kb on + strand, within ABID97_RS18845at 3882.072 kb on + strand, within ABID97_RS18845at 3882.160 kb on + strand, within ABID97_RS18845at 3882.161 kb on - strand, within ABID97_RS18845at 3882.164 kb on + strand, within ABID97_RS18845at 3882.583 kb on - strandat 3882.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,881,661 + ABID97_RS18845 0.20 -1.6
3,881,760 + ABID97_RS18845 0.28 -0.4
3,881,761 - ABID97_RS18845 0.29 +0.2
3,881,896 + ABID97_RS18845 0.40 -0.7
3,881,896 + ABID97_RS18845 0.40 +0.3
3,881,897 - ABID97_RS18845 0.40 -0.0
3,881,897 - ABID97_RS18845 0.40 +0.2
3,881,994 + ABID97_RS18845 0.49 -0.7
3,882,072 + ABID97_RS18845 0.56 +0.8
3,882,072 + ABID97_RS18845 0.56 +0.2
3,882,160 + ABID97_RS18845 0.63 -0.3
3,882,161 - ABID97_RS18845 0.63 -1.4
3,882,164 + ABID97_RS18845 0.64 -0.6
3,882,583 - +0.6
3,882,612 - -0.6

Or see this region's nucleotide sequence