Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11690

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11685 and ABID97_RS11690 are separated by 23 nucleotidesABID97_RS11690 and ABID97_RS11695 are separated by 4 nucleotides ABID97_RS11685: ABID97_RS11685 - M20/M25/M40 family metallo-hydrolase, at 2,413,988 to 2,415,205 _RS11685 ABID97_RS11690: ABID97_RS11690 - hydantoinase B/oxoprolinase family protein, at 2,415,229 to 2,418,876 _RS11690 ABID97_RS11695: ABID97_RS11695 - IS481 family transposase, at 2,418,881 to 2,419,831 _RS11695 Position (kb) 2415 2416 2417 2418 2419Strain fitness (log2 ratio) -2 -1 0 1 2at 2414.349 kb on - strand, within ABID97_RS11685at 2414.796 kb on - strand, within ABID97_RS11685at 2415.108 kb on - strandat 2415.168 kb on - strandat 2415.234 kb on + strandat 2415.309 kb on + strandat 2415.625 kb on + strand, within ABID97_RS11690at 2416.145 kb on - strand, within ABID97_RS11690at 2417.632 kb on + strand, within ABID97_RS11690at 2417.959 kb on + strand, within ABID97_RS11690at 2417.960 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.415 kb on + strand, within ABID97_RS11690at 2418.416 kb on - strand, within ABID97_RS11690at 2418.422 kb on - strand, within ABID97_RS11690at 2418.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,414,349 - ABID97_RS11685 0.30 -0.2
2,414,796 - ABID97_RS11685 0.66 +2.1
2,415,108 - -0.1
2,415,168 - -0.6
2,415,234 + +0.8
2,415,309 + +0.3
2,415,625 + ABID97_RS11690 0.11 -0.5
2,416,145 - ABID97_RS11690 0.25 -0.6
2,417,632 + ABID97_RS11690 0.66 -1.1
2,417,959 + ABID97_RS11690 0.75 -0.0
2,417,960 - ABID97_RS11690 0.75 -2.3
2,418,185 - ABID97_RS11690 0.81 +1.6
2,418,185 - ABID97_RS11690 0.81 -0.7
2,418,185 - ABID97_RS11690 0.81 -0.0
2,418,185 - ABID97_RS11690 0.81 -0.7
2,418,415 + ABID97_RS11690 0.87 -0.1
2,418,416 - ABID97_RS11690 0.87 +1.1
2,418,422 - ABID97_RS11690 0.88 +0.5
2,418,753 - -0.7

Or see this region's nucleotide sequence