Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10910

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10905 and ABID97_RS10910 are separated by 9 nucleotidesABID97_RS10910 and ABID97_RS10915 overlap by 14 nucleotides ABID97_RS10905: ABID97_RS10905 - gephyrin-like molybdotransferase Glp, at 2,258,601 to 2,259,878 _RS10905 ABID97_RS10910: ABID97_RS10910 - MoaD/ThiS family protein, at 2,259,888 to 2,260,139 _RS10910 ABID97_RS10915: ABID97_RS10915 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,260,126 to 2,261,022 _RS10915 Position (kb) 2259 2260 2261Strain fitness (log2 ratio) -2 -1 0 1at 2259.246 kb on + strand, within ABID97_RS10905at 2259.247 kb on - strand, within ABID97_RS10905at 2259.247 kb on - strand, within ABID97_RS10905at 2259.499 kb on - strand, within ABID97_RS10905at 2260.014 kb on + strand, within ABID97_RS10910at 2260.015 kb on - strand, within ABID97_RS10910at 2260.598 kb on + strand, within ABID97_RS10915at 2260.598 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,259,246 + ABID97_RS10905 0.50 -0.1
2,259,247 - ABID97_RS10905 0.51 +0.4
2,259,247 - ABID97_RS10905 0.51 +0.0
2,259,499 - ABID97_RS10905 0.70 -1.8
2,260,014 + ABID97_RS10910 0.50 -0.2
2,260,015 - ABID97_RS10910 0.50 +0.1
2,260,598 + ABID97_RS10915 0.53 +0.4
2,260,598 + ABID97_RS10915 0.53 -0.2
2,260,676 + ABID97_RS10915 0.61 -0.1
2,260,676 + ABID97_RS10915 0.61 +0.4
2,260,676 + ABID97_RS10915 0.61 -0.3
2,260,677 - ABID97_RS10915 0.61 -0.2
2,260,677 - ABID97_RS10915 0.61 -1.3
2,260,677 - ABID97_RS10915 0.61 +0.2

Or see this region's nucleotide sequence