Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08970 and ABID97_RS08975 overlap by 1 nucleotides ABID97_RS08975 and ABID97_RS08980 are separated by 84 nucleotides
ABID97_RS08970: ABID97_RS08970 - type VI secretion system tip protein TssI/VgrG, at 1,880,219 to 1,882,798
_RS08970
ABID97_RS08975: ABID97_RS08975 - DUF4123 domain-containing protein, at 1,882,798 to 1,883,736
_RS08975
ABID97_RS08980: ABID97_RS08980 - hypothetical protein, at 1,883,821 to 1,885,104
_RS08980
Position (kb) 1882
1883
1884 Strain fitness (log2 ratio) -1
0
1
2 at 1882.590 kb on + strand at 1882.590 kb on + strand at 1882.591 kb on - strand at 1882.809 kb on + strand at 1882.810 kb on - strand at 1882.997 kb on - strand, within ABID97_RS08975 at 1883.185 kb on + strand, within ABID97_RS08975 at 1883.328 kb on + strand, within ABID97_RS08975 at 1883.329 kb on - strand, within ABID97_RS08975 at 1883.389 kb on + strand, within ABID97_RS08975 at 1883.664 kb on - strand at 1883.883 kb on - strand at 1883.965 kb on + strand, within ABID97_RS08980 at 1883.966 kb on - strand, within ABID97_RS08980 at 1884.049 kb on - strand, within ABID97_RS08980 at 1884.084 kb on - strand, within ABID97_RS08980 at 1884.306 kb on - strand, within ABID97_RS08980 at 1884.572 kb on - strand, within ABID97_RS08980 at 1884.593 kb on - strand, within ABID97_RS08980 at 1884.594 kb on + strand, within ABID97_RS08980 at 1884.595 kb on - strand, within ABID97_RS08980 at 1884.648 kb on + strand, within ABID97_RS08980
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,882,590 + -0.5 1,882,590 + -0.9 1,882,591 - +2.0 1,882,809 + -0.2 1,882,810 - -0.0 1,882,997 - ABID97_RS08975 0.21 +0.0 1,883,185 + ABID97_RS08975 0.41 -0.2 1,883,328 + ABID97_RS08975 0.56 +1.0 1,883,329 - ABID97_RS08975 0.57 +0.0 1,883,389 + ABID97_RS08975 0.63 -0.6 1,883,664 - +0.4 1,883,883 - +0.7 1,883,965 + ABID97_RS08980 0.11 -0.1 1,883,966 - ABID97_RS08980 0.11 -0.6 1,884,049 - ABID97_RS08980 0.18 +0.1 1,884,084 - ABID97_RS08980 0.20 -0.3 1,884,306 - ABID97_RS08980 0.38 -0.0 1,884,572 - ABID97_RS08980 0.58 +0.1 1,884,593 - ABID97_RS08980 0.60 +0.1 1,884,594 + ABID97_RS08980 0.60 -0.6 1,884,595 - ABID97_RS08980 0.60 +0.8 1,884,648 + ABID97_RS08980 0.64 +0.4
Or see this region's nucleotide sequence