Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07150

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07145 and ABID97_RS07150 are separated by 14 nucleotidesABID97_RS07150 and ABID97_RS07155 are separated by 16 nucleotides ABID97_RS07145: ABID97_RS07145 - carbohydrate kinase, at 1,513,841 to 1,514,809 _RS07145 ABID97_RS07150: ABID97_RS07150 - AraC family transcriptional regulator, at 1,514,824 to 1,515,762 _RS07150 ABID97_RS07155: ABID97_RS07155 - xylulokinase, at 1,515,779 to 1,517,263 _RS07155 Position (kb) 1514 1515 1516Strain fitness (log2 ratio) -2 -1 0 1at 1514.057 kb on + strand, within ABID97_RS07145at 1514.057 kb on + strand, within ABID97_RS07145at 1514.057 kb on + strand, within ABID97_RS07145at 1514.058 kb on - strand, within ABID97_RS07145at 1514.058 kb on - strand, within ABID97_RS07145at 1514.058 kb on - strand, within ABID97_RS07145at 1514.058 kb on - strand, within ABID97_RS07145at 1514.132 kb on + strand, within ABID97_RS07145at 1514.133 kb on - strand, within ABID97_RS07145at 1514.133 kb on - strand, within ABID97_RS07145at 1514.995 kb on + strand, within ABID97_RS07150at 1514.995 kb on + strand, within ABID97_RS07150at 1514.996 kb on - strand, within ABID97_RS07150at 1515.637 kb on + strand, within ABID97_RS07150at 1515.637 kb on + strand, within ABID97_RS07150at 1515.637 kb on + strand, within ABID97_RS07150at 1515.637 kb on + strand, within ABID97_RS07150at 1515.638 kb on - strand, within ABID97_RS07150at 1515.638 kb on - strand, within ABID97_RS07150at 1515.655 kb on + strand, within ABID97_RS07150at 1515.782 kb on + strandat 1515.782 kb on + strandat 1515.782 kb on + strandat 1515.783 kb on - strandat 1515.783 kb on - strandat 1515.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,514,057 + ABID97_RS07145 0.22 +0.7
1,514,057 + ABID97_RS07145 0.22 -1.1
1,514,057 + ABID97_RS07145 0.22 -0.2
1,514,058 - ABID97_RS07145 0.22 -1.9
1,514,058 - ABID97_RS07145 0.22 +0.1
1,514,058 - ABID97_RS07145 0.22 +0.5
1,514,058 - ABID97_RS07145 0.22 +1.2
1,514,132 + ABID97_RS07145 0.30 -0.3
1,514,133 - ABID97_RS07145 0.30 -0.3
1,514,133 - ABID97_RS07145 0.30 +0.0
1,514,995 + ABID97_RS07150 0.18 +0.3
1,514,995 + ABID97_RS07150 0.18 +0.2
1,514,996 - ABID97_RS07150 0.18 -0.4
1,515,637 + ABID97_RS07150 0.87 +0.1
1,515,637 + ABID97_RS07150 0.87 -0.8
1,515,637 + ABID97_RS07150 0.87 -0.1
1,515,637 + ABID97_RS07150 0.87 +0.5
1,515,638 - ABID97_RS07150 0.87 -1.1
1,515,638 - ABID97_RS07150 0.87 +0.1
1,515,655 + ABID97_RS07150 0.88 -0.4
1,515,782 + -0.3
1,515,782 + -0.8
1,515,782 + -0.3
1,515,783 - +0.8
1,515,783 - -0.5
1,515,783 - +0.1

Or see this region's nucleotide sequence