Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03460 and ABID97_RS03465 are separated by 104 nucleotides ABID97_RS03465 and ABID97_RS03470 are separated by 215 nucleotides
ABID97_RS03460: ABID97_RS03460 - LysR family transcriptional regulator, at 703,840 to 704,757
_RS03460
ABID97_RS03465: ABID97_RS03465 - PACE efflux transporter, at 704,862 to 705,317
_RS03465
ABID97_RS03470: ABID97_RS03470 - methionine synthase, at 705,533 to 708,247
_RS03470
Position (kb) 704
705
706 Strain fitness (log2 ratio) -1
0
1
2 at 704.403 kb on - strand, within ABID97_RS03460 at 704.644 kb on + strand, within ABID97_RS03460 at 704.645 kb on - strand, within ABID97_RS03460 at 704.804 kb on - strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 705.219 kb on + strand, within ABID97_RS03465 at 705.219 kb on + strand, within ABID97_RS03465 at 705.995 kb on + strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 705.996 kb on - strand, within ABID97_RS03470 at 706.028 kb on + strand, within ABID97_RS03470 at 706.127 kb on + strand, within ABID97_RS03470 at 706.127 kb on + strand, within ABID97_RS03470 at 706.127 kb on + strand, within ABID97_RS03470 at 706.128 kb on - strand, within ABID97_RS03470 at 706.128 kb on - strand, within ABID97_RS03470 at 706.128 kb on - strand, within ABID97_RS03470 at 706.128 kb on - strand, within ABID97_RS03470 at 706.269 kb on - strand, within ABID97_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 704,403 - ABID97_RS03460 0.61 +0.2 704,644 + ABID97_RS03460 0.88 +1.0 704,645 - ABID97_RS03460 0.88 -0.5 704,804 - +0.0 704,889 + -0.4 704,889 + -1.2 704,889 + -0.4 704,889 + -0.0 704,889 + +1.1 704,889 + +1.9 704,889 + -0.2 704,889 + -1.0 704,890 - +0.1 704,890 - +0.2 704,890 - -0.2 704,890 - +0.6 704,890 - +0.2 704,890 - -0.9 704,890 - +0.6 705,219 + ABID97_RS03465 0.78 -0.9 705,219 + ABID97_RS03465 0.78 -0.4 705,995 + ABID97_RS03470 0.17 +0.2 705,996 - ABID97_RS03470 0.17 +0.0 705,996 - ABID97_RS03470 0.17 +0.8 705,996 - ABID97_RS03470 0.17 +0.5 705,996 - ABID97_RS03470 0.17 -0.8 705,996 - ABID97_RS03470 0.17 +0.1 705,996 - ABID97_RS03470 0.17 -0.5 705,996 - ABID97_RS03470 0.17 +0.8 706,028 + ABID97_RS03470 0.18 +0.0 706,127 + ABID97_RS03470 0.22 -0.2 706,127 + ABID97_RS03470 0.22 +0.7 706,127 + ABID97_RS03470 0.22 +0.6 706,128 - ABID97_RS03470 0.22 +0.3 706,128 - ABID97_RS03470 0.22 +0.3 706,128 - ABID97_RS03470 0.22 +0.1 706,128 - ABID97_RS03470 0.22 +0.2 706,269 - ABID97_RS03470 0.27 +0.1
Or see this region's nucleotide sequence