Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01980 and ABID97_RS01985 are separated by 194 nucleotides ABID97_RS01985 and ABID97_RS01990 are separated by 14 nucleotides ABID97_RS01990 and ABID97_RS01995 are separated by 40 nucleotides
ABID97_RS01980: ABID97_RS01980 - hypothetical protein, at 394,575 to 394,739
_RS01980
ABID97_RS01985: ABID97_RS01985 - OmpA family protein, at 394,934 to 395,595
_RS01985
ABID97_RS01990: ABID97_RS01990 - response regulator, at 395,610 to 396,236
_RS01990
ABID97_RS01995: ABID97_RS01995 - PAS domain S-box protein, at 396,277 to 398,325
_RS01995
Position (kb) 395
396
397 Strain fitness (log2 ratio) -1
0
1 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.895 kb on + strand at 394.947 kb on + strand at 394.947 kb on + strand at 395.444 kb on + strand, within ABID97_RS01985 at 395.444 kb on + strand, within ABID97_RS01985 at 395.445 kb on - strand, within ABID97_RS01985 at 395.445 kb on - strand, within ABID97_RS01985 at 395.566 kb on + strand at 395.566 kb on + strand at 395.566 kb on + strand at 395.567 kb on - strand at 395.567 kb on - strand at 395.567 kb on - strand at 395.611 kb on + strand at 395.611 kb on + strand at 395.611 kb on + strand at 395.612 kb on - strand at 395.612 kb on - strand at 395.612 kb on - strand at 396.236 kb on + strand at 396.236 kb on + strand at 396.236 kb on + strand at 396.619 kb on + strand, within ABID97_RS01995 at 396.619 kb on + strand, within ABID97_RS01995 at 396.619 kb on + strand, within ABID97_RS01995 at 396.619 kb on + strand, within ABID97_RS01995 at 396.619 kb on + strand, within ABID97_RS01995 at 396.620 kb on - strand, within ABID97_RS01995 at 396.620 kb on - strand, within ABID97_RS01995 at 396.620 kb on - strand, within ABID97_RS01995 at 396.917 kb on + strand, within ABID97_RS01995 at 396.918 kb on - strand, within ABID97_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 394,621 + ABID97_RS01980 0.28 -0.8 394,621 + ABID97_RS01980 0.28 -0.5 394,621 + ABID97_RS01980 0.28 -0.2 394,621 + ABID97_RS01980 0.28 -1.1 394,621 + ABID97_RS01980 0.28 +0.2 394,622 - ABID97_RS01980 0.28 -0.3 394,622 - ABID97_RS01980 0.28 -0.9 394,622 - ABID97_RS01980 0.28 -0.4 394,895 + -1.4 394,947 + +0.3 394,947 + +0.6 395,444 + ABID97_RS01985 0.77 -0.3 395,444 + ABID97_RS01985 0.77 -0.8 395,445 - ABID97_RS01985 0.77 -1.7 395,445 - ABID97_RS01985 0.77 -0.2 395,566 + -0.9 395,566 + -0.1 395,566 + -0.2 395,567 - +0.8 395,567 - -0.7 395,567 - -0.4 395,611 + +0.2 395,611 + -0.3 395,611 + -0.3 395,612 - -0.2 395,612 - -0.8 395,612 - -0.6 396,236 + -0.2 396,236 + +0.3 396,236 + -0.4 396,619 + ABID97_RS01995 0.17 +0.7 396,619 + ABID97_RS01995 0.17 -0.3 396,619 + ABID97_RS01995 0.17 -0.0 396,619 + ABID97_RS01995 0.17 -0.2 396,619 + ABID97_RS01995 0.17 +0.2 396,620 - ABID97_RS01995 0.17 +0.3 396,620 - ABID97_RS01995 0.17 +1.3 396,620 - ABID97_RS01995 0.17 -0.0 396,917 + ABID97_RS01995 0.31 -0.3 396,918 - ABID97_RS01995 0.31 -0.1
Or see this region's nucleotide sequence