Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3091

Experiment: m.b. perchlorate 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3090 and Echvi_3091 are separated by 284 nucleotidesEchvi_3091 and Echvi_3092 overlap by 20 nucleotides Echvi_3090: Echvi_3090 - hypothetical protein, at 3,691,146 to 3,692,510 _3090 Echvi_3091: Echvi_3091 - Malate/L-lactate dehydrogenases, at 3,692,795 to 3,693,820 _3091 Echvi_3092: Echvi_3092 - Predicted dehydrogenases and related proteins, at 3,693,801 to 3,694,811 _3092 Position (kb) 3692 3693 3694Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3691.899 kb on + strand, within Echvi_3090at 3691.899 kb on + strand, within Echvi_3090at 3691.944 kb on + strandat 3691.944 kb on + strand, within Echvi_3090at 3691.944 kb on + strand, within Echvi_3090at 3691.945 kb on - strand, within Echvi_3090at 3691.946 kb on + strand, within Echvi_3090at 3691.946 kb on + strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.947 kb on - strand, within Echvi_3090at 3691.950 kb on - strand, within Echvi_3090at 3691.962 kb on + strand, within Echvi_3090at 3691.963 kb on - strand, within Echvi_3090at 3691.965 kb on + strand, within Echvi_3090at 3691.965 kb on + strand, within Echvi_3090at 3691.965 kb on + strand, within Echvi_3090at 3692.017 kb on - strand, within Echvi_3090at 3692.069 kb on + strand, within Echvi_3090at 3692.093 kb on - strand, within Echvi_3090at 3692.181 kb on - strand, within Echvi_3090at 3692.181 kb on - strand, within Echvi_3090at 3692.182 kb on + strand, within Echvi_3090at 3692.182 kb on + strand, within Echvi_3090at 3692.183 kb on - strand, within Echvi_3090at 3692.187 kb on + strand, within Echvi_3090at 3692.241 kb on - strand, within Echvi_3090at 3692.241 kb on - strand, within Echvi_3090at 3692.251 kb on + strand, within Echvi_3090at 3692.430 kb on - strandat 3692.464 kb on - strandat 3692.465 kb on + strandat 3692.466 kb on - strandat 3692.481 kb on + strandat 3692.485 kb on + strandat 3692.485 kb on + strandat 3692.486 kb on - strandat 3692.489 kb on + strandat 3692.509 kb on - strandat 3692.524 kb on - strandat 3692.560 kb on + strandat 3692.560 kb on + strandat 3692.561 kb on - strandat 3692.561 kb on - strandat 3692.655 kb on + strandat 3692.655 kb on + strandat 3692.655 kb on + strandat 3692.656 kb on - strandat 3692.660 kb on - strandat 3692.660 kb on - strandat 3692.763 kb on + strandat 3692.764 kb on - strandat 3692.764 kb on - strandat 3692.764 kb on - strandat 3692.765 kb on + strandat 3692.765 kb on + strandat 3692.766 kb on - strandat 3692.863 kb on + strandat 3692.892 kb on - strandat 3692.892 kb on - strandat 3692.895 kb on + strandat 3692.896 kb on - strandat 3692.896 kb on - strandat 3692.896 kb on - strandat 3692.896 kb on - strandat 3692.955 kb on - strand, within Echvi_3091at 3692.958 kb on + strand, within Echvi_3091at 3692.958 kb on + strand, within Echvi_3091at 3692.958 kb on + strand, within Echvi_3091at 3692.958 kb on + strand, within Echvi_3091at 3692.959 kb on - strand, within Echvi_3091at 3692.959 kb on - strand, within Echvi_3091at 3692.959 kb on - strand, within Echvi_3091at 3692.959 kb on - strand, within Echvi_3091at 3692.959 kb on - strand, within Echvi_3091at 3692.964 kb on - strand, within Echvi_3091at 3692.990 kb on - strand, within Echvi_3091at 3693.139 kb on + strand, within Echvi_3091at 3693.196 kb on + strand, within Echvi_3091at 3693.196 kb on + strand, within Echvi_3091at 3693.197 kb on - strand, within Echvi_3091at 3693.288 kb on + strand, within Echvi_3091at 3693.319 kb on + strand, within Echvi_3091at 3693.737 kb on + strandat 3693.738 kb on - strandat 3693.739 kb on + strandat 3693.739 kb on + strandat 3693.740 kb on - strandat 3693.748 kb on - strandat 3693.841 kb on + strandat 3693.841 kb on + strandat 3693.842 kb on - strandat 3693.842 kb on - strandat 3694.001 kb on - strand, within Echvi_3092at 3694.026 kb on + strand, within Echvi_3092at 3694.026 kb on + strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.060 kb on - strand, within Echvi_3092at 3694.062 kb on - strand, within Echvi_3092at 3694.067 kb on - strand, within Echvi_3092at 3694.095 kb on + strand, within Echvi_3092at 3694.122 kb on + strand, within Echvi_3092at 3694.177 kb on - strand, within Echvi_3092at 3694.202 kb on - strand, within Echvi_3092at 3694.269 kb on - strand, within Echvi_3092at 3694.455 kb on + strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.474 kb on + strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.477 kb on + strand, within Echvi_3092at 3694.478 kb on - strand, within Echvi_3092at 3694.560 kb on - strand, within Echvi_3092at 3694.570 kb on - strand, within Echvi_3092at 3694.570 kb on - strand, within Echvi_3092at 3694.594 kb on - strand, within Echvi_3092at 3694.718 kb on - strandat 3694.748 kb on - strandat 3694.772 kb on - strandat 3694.772 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM
remove
3,691,899 + Echvi_3090 0.55 -0.3
3,691,899 + Echvi_3090 0.55 -1.1
3,691,944 + +0.0
3,691,944 + Echvi_3090 0.58 -0.4
3,691,944 + Echvi_3090 0.58 -0.6
3,691,945 - Echvi_3090 0.59 -0.4
3,691,946 + Echvi_3090 0.59 -0.6
3,691,946 + Echvi_3090 0.59 +0.4
3,691,947 - Echvi_3090 0.59 +0.7
3,691,947 - Echvi_3090 0.59 +0.2
3,691,947 - Echvi_3090 0.59 +0.7
3,691,947 - Echvi_3090 0.59 +0.4
3,691,947 - Echvi_3090 0.59 +1.1
3,691,947 - Echvi_3090 0.59 -1.6
3,691,950 - Echvi_3090 0.59 -0.3
3,691,962 + Echvi_3090 0.60 -2.6
3,691,963 - Echvi_3090 0.60 -1.4
3,691,965 + Echvi_3090 0.60 +0.8
3,691,965 + Echvi_3090 0.60 +0.2
3,691,965 + Echvi_3090 0.60 +0.7
3,692,017 - Echvi_3090 0.64 +0.4
3,692,069 + Echvi_3090 0.68 -2.1
3,692,093 - Echvi_3090 0.69 +0.0
3,692,181 - Echvi_3090 0.76 -1.0
3,692,181 - Echvi_3090 0.76 +0.1
3,692,182 + Echvi_3090 0.76 +0.4
3,692,182 + Echvi_3090 0.76 +0.6
3,692,183 - Echvi_3090 0.76 -1.2
3,692,187 + Echvi_3090 0.76 +0.7
3,692,241 - Echvi_3090 0.80 +1.1
3,692,241 - Echvi_3090 0.80 +0.4
3,692,251 + Echvi_3090 0.81 -1.0
3,692,430 - -1.0
3,692,464 - +0.5
3,692,465 + -0.1
3,692,466 - +0.8
3,692,481 + -0.3
3,692,485 + -0.2
3,692,485 + +1.0
3,692,486 - +0.5
3,692,489 + -0.5
3,692,509 - +0.9
3,692,524 - -0.3
3,692,560 + -0.7
3,692,560 + -2.9
3,692,561 - +1.4
3,692,561 - -0.6
3,692,655 + -0.8
3,692,655 + +0.1
3,692,655 + +0.6
3,692,656 - -1.5
3,692,660 - -0.1
3,692,660 - -0.2
3,692,763 + -1.6
3,692,764 - -0.4
3,692,764 - +0.1
3,692,764 - -1.2
3,692,765 + +0.3
3,692,765 + +1.4
3,692,766 - +0.3
3,692,863 + +1.2
3,692,892 - -0.0
3,692,892 - -0.1
3,692,895 + -1.4
3,692,896 - -0.2
3,692,896 - +0.6
3,692,896 - +1.4
3,692,896 - -0.3
3,692,955 - Echvi_3091 0.16 +1.5
3,692,958 + Echvi_3091 0.16 +0.5
3,692,958 + Echvi_3091 0.16 -1.4
3,692,958 + Echvi_3091 0.16 +1.1
3,692,958 + Echvi_3091 0.16 -0.5
3,692,959 - Echvi_3091 0.16 +0.5
3,692,959 - Echvi_3091 0.16 -0.3
3,692,959 - Echvi_3091 0.16 +0.0
3,692,959 - Echvi_3091 0.16 -2.2
3,692,959 - Echvi_3091 0.16 -1.3
3,692,964 - Echvi_3091 0.16 +1.3
3,692,990 - Echvi_3091 0.19 -0.2
3,693,139 + Echvi_3091 0.34 -0.1
3,693,196 + Echvi_3091 0.39 -1.3
3,693,196 + Echvi_3091 0.39 +0.9
3,693,197 - Echvi_3091 0.39 +0.8
3,693,288 + Echvi_3091 0.48 +1.7
3,693,319 + Echvi_3091 0.51 +1.0
3,693,737 + -0.9
3,693,738 - +0.4
3,693,739 + +0.0
3,693,739 + +0.2
3,693,740 - +0.2
3,693,748 - +0.2
3,693,841 + +0.3
3,693,841 + +0.4
3,693,842 - +0.6
3,693,842 - -0.0
3,694,001 - Echvi_3092 0.20 -0.8
3,694,026 + Echvi_3092 0.22 +0.4
3,694,026 + Echvi_3092 0.22 +0.2
3,694,027 - Echvi_3092 0.22 -3.0
3,694,027 - Echvi_3092 0.22 -1.0
3,694,027 - Echvi_3092 0.22 -0.3
3,694,060 - Echvi_3092 0.26 +1.1
3,694,062 - Echvi_3092 0.26 +0.4
3,694,067 - Echvi_3092 0.26 -2.1
3,694,095 + Echvi_3092 0.29 -0.2
3,694,122 + Echvi_3092 0.32 +0.3
3,694,177 - Echvi_3092 0.37 -0.8
3,694,202 - Echvi_3092 0.40 -0.9
3,694,269 - Echvi_3092 0.46 +0.5
3,694,455 + Echvi_3092 0.65 +1.4
3,694,456 - Echvi_3092 0.65 +0.5
3,694,456 - Echvi_3092 0.65 -0.1
3,694,456 - Echvi_3092 0.65 -0.7
3,694,474 + Echvi_3092 0.67 -2.0
3,694,475 - Echvi_3092 0.67 +1.4
3,694,475 - Echvi_3092 0.67 -3.1
3,694,475 - Echvi_3092 0.67 -0.4
3,694,477 + Echvi_3092 0.67 +2.4
3,694,478 - Echvi_3092 0.67 +0.1
3,694,560 - Echvi_3092 0.75 +1.3
3,694,570 - Echvi_3092 0.76 -0.8
3,694,570 - Echvi_3092 0.76 -1.4
3,694,594 - Echvi_3092 0.78 -0.4
3,694,718 - -0.5
3,694,748 - -1.1
3,694,772 - -2.0
3,694,772 - -0.1

Or see this region's nucleotide sequence