Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2286

Experiment: m.b. perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2285 and Echvi_2286 are separated by 341 nucleotidesEchvi_2286 and Echvi_2287 are separated by 33 nucleotides Echvi_2285: Echvi_2285 - hypothetical protein, at 2,706,936 to 2,707,610 _2285 Echvi_2286: Echvi_2286 - hypothetical protein, at 2,707,952 to 2,709,088 _2286 Echvi_2287: Echvi_2287 - hypothetical protein, at 2,709,122 to 2,709,904 _2287 Position (kb) 2707 2708 2709 2710Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2707.014 kb on + strand, within Echvi_2285at 2707.070 kb on - strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strandat 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.104 kb on + strand, within Echvi_2285at 2707.212 kb on - strand, within Echvi_2285at 2707.245 kb on + strand, within Echvi_2285at 2707.333 kb on + strand, within Echvi_2285at 2707.333 kb on + strand, within Echvi_2285at 2707.334 kb on - strand, within Echvi_2285at 2707.334 kb on - strand, within Echvi_2285at 2707.399 kb on + strand, within Echvi_2285at 2707.399 kb on + strand, within Echvi_2285at 2707.425 kb on + strand, within Echvi_2285at 2707.558 kb on - strandat 2707.560 kb on + strandat 2707.561 kb on - strandat 2707.569 kb on + strandat 2707.613 kb on + strandat 2707.645 kb on + strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.679 kb on + strandat 2707.683 kb on + strandat 2707.779 kb on + strandat 2707.780 kb on - strandat 2707.780 kb on - strandat 2707.856 kb on - strandat 2708.033 kb on - strandat 2708.033 kb on - strandat 2708.033 kb on - strandat 2708.036 kb on + strandat 2708.036 kb on + strandat 2708.037 kb on - strandat 2708.037 kb on - strandat 2708.041 kb on - strandat 2708.065 kb on + strandat 2708.096 kb on + strand, within Echvi_2286at 2708.106 kb on - strand, within Echvi_2286at 2708.108 kb on - strand, within Echvi_2286at 2708.161 kb on + strand, within Echvi_2286at 2708.162 kb on - strand, within Echvi_2286at 2708.166 kb on + strand, within Echvi_2286at 2708.480 kb on + strand, within Echvi_2286at 2708.519 kb on - strand, within Echvi_2286at 2708.705 kb on + strand, within Echvi_2286at 2708.706 kb on - strand, within Echvi_2286at 2708.706 kb on - strand, within Echvi_2286at 2708.706 kb on - strand, within Echvi_2286at 2708.767 kb on - strand, within Echvi_2286at 2708.768 kb on + strand, within Echvi_2286at 2708.889 kb on + strand, within Echvi_2286at 2708.889 kb on + strand, within Echvi_2286at 2708.897 kb on + strand, within Echvi_2286at 2708.898 kb on - strand, within Echvi_2286at 2708.898 kb on - strand, within Echvi_2286at 2708.947 kb on - strand, within Echvi_2286at 2709.079 kb on - strandat 2709.087 kb on - strandat 2709.125 kb on + strandat 2709.125 kb on + strandat 2709.125 kb on + strandat 2709.226 kb on + strand, within Echvi_2287at 2709.227 kb on - strand, within Echvi_2287at 2709.231 kb on - strand, within Echvi_2287at 2709.283 kb on - strand, within Echvi_2287at 2709.501 kb on - strand, within Echvi_2287at 2709.521 kb on + strand, within Echvi_2287at 2709.522 kb on - strand, within Echvi_2287at 2709.522 kb on - strand, within Echvi_2287at 2709.530 kb on + strand, within Echvi_2287at 2709.530 kb on + strand, within Echvi_2287at 2709.531 kb on - strand, within Echvi_2287at 2709.594 kb on - strand, within Echvi_2287at 2709.668 kb on - strand, within Echvi_2287at 2709.691 kb on - strand, within Echvi_2287at 2709.700 kb on - strand, within Echvi_2287at 2709.754 kb on + strand, within Echvi_2287at 2709.754 kb on + strand, within Echvi_2287at 2709.755 kb on - strand, within Echvi_2287at 2709.799 kb on + strand, within Echvi_2287at 2709.825 kb on + strand, within Echvi_2287at 2709.922 kb on - strandat 2709.925 kb on - strandat 2710.009 kb on + strandat 2710.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM
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2,707,014 + Echvi_2285 0.12 -0.3
2,707,070 - Echvi_2285 0.20 +0.2
2,707,096 + Echvi_2285 0.24 -0.3
2,707,096 + Echvi_2285 0.24 -0.5
2,707,096 + Echvi_2285 0.24 -0.1
2,707,096 + -0.1
2,707,096 + Echvi_2285 0.24 -0.2
2,707,096 + Echvi_2285 0.24 +0.6
2,707,097 - Echvi_2285 0.24 -0.7
2,707,097 - Echvi_2285 0.24 -0.0
2,707,097 - Echvi_2285 0.24 +0.3
2,707,097 - Echvi_2285 0.24 +1.0
2,707,097 - Echvi_2285 0.24 +0.0
2,707,104 + Echvi_2285 0.25 -0.5
2,707,212 - Echvi_2285 0.41 +1.0
2,707,245 + Echvi_2285 0.46 +1.0
2,707,333 + Echvi_2285 0.59 -0.6
2,707,333 + Echvi_2285 0.59 +0.3
2,707,334 - Echvi_2285 0.59 -1.2
2,707,334 - Echvi_2285 0.59 +0.9
2,707,399 + Echvi_2285 0.69 -1.8
2,707,399 + Echvi_2285 0.69 -0.3
2,707,425 + Echvi_2285 0.72 +0.3
2,707,558 - -0.1
2,707,560 + -0.3
2,707,561 - -0.5
2,707,569 + -0.2
2,707,613 + -0.4
2,707,645 + -0.5
2,707,646 - +0.2
2,707,646 - +1.6
2,707,646 - -1.5
2,707,679 + +1.4
2,707,683 + +1.3
2,707,779 + -1.5
2,707,780 - -0.7
2,707,780 - -0.6
2,707,856 - +1.0
2,708,033 - +2.2
2,708,033 - +1.0
2,708,033 - +0.3
2,708,036 + +0.6
2,708,036 + -1.6
2,708,037 - -0.0
2,708,037 - -0.5
2,708,041 - +1.7
2,708,065 + +0.8
2,708,096 + Echvi_2286 0.13 +3.5
2,708,106 - Echvi_2286 0.14 +0.6
2,708,108 - Echvi_2286 0.14 +0.0
2,708,161 + Echvi_2286 0.18 -0.3
2,708,162 - Echvi_2286 0.18 -1.4
2,708,166 + Echvi_2286 0.19 +1.2
2,708,480 + Echvi_2286 0.46 -0.5
2,708,519 - Echvi_2286 0.50 -0.7
2,708,705 + Echvi_2286 0.66 +1.0
2,708,706 - Echvi_2286 0.66 +0.8
2,708,706 - Echvi_2286 0.66 -0.8
2,708,706 - Echvi_2286 0.66 -0.6
2,708,767 - Echvi_2286 0.72 -0.5
2,708,768 + Echvi_2286 0.72 +0.7
2,708,889 + Echvi_2286 0.82 +0.7
2,708,889 + Echvi_2286 0.82 -0.5
2,708,897 + Echvi_2286 0.83 +1.3
2,708,898 - Echvi_2286 0.83 +1.1
2,708,898 - Echvi_2286 0.83 -0.1
2,708,947 - Echvi_2286 0.88 +0.6
2,709,079 - -0.2
2,709,087 - +0.4
2,709,125 + -0.1
2,709,125 + -0.7
2,709,125 + -0.1
2,709,226 + Echvi_2287 0.13 +0.3
2,709,227 - Echvi_2287 0.13 -0.1
2,709,231 - Echvi_2287 0.14 +0.4
2,709,283 - Echvi_2287 0.21 -0.2
2,709,501 - Echvi_2287 0.48 -0.4
2,709,521 + Echvi_2287 0.51 -0.8
2,709,522 - Echvi_2287 0.51 -0.7
2,709,522 - Echvi_2287 0.51 -1.0
2,709,530 + Echvi_2287 0.52 -1.7
2,709,530 + Echvi_2287 0.52 +0.2
2,709,531 - Echvi_2287 0.52 -2.4
2,709,594 - Echvi_2287 0.60 +0.2
2,709,668 - Echvi_2287 0.70 +0.0
2,709,691 - Echvi_2287 0.73 -0.3
2,709,700 - Echvi_2287 0.74 +0.4
2,709,754 + Echvi_2287 0.81 +0.8
2,709,754 + Echvi_2287 0.81 -0.1
2,709,755 - Echvi_2287 0.81 -0.6
2,709,799 + Echvi_2287 0.86 -0.2
2,709,825 + Echvi_2287 0.90 +0.2
2,709,922 - -0.7
2,709,925 - -1.3
2,710,009 + +0.2
2,710,048 - +1.9

Or see this region's nucleotide sequence