Experiment: m.b. perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0542 and Echvi_0543 are separated by 192 nucleotides Echvi_0543 and Echvi_0544 are separated by 473 nucleotides
Echvi_0542: Echvi_0542 - RND family efflux transporter, MFP subunit, at 606,216 to 607,307
_0542
Echvi_0543: Echvi_0543 - hypothetical protein, at 607,500 to 607,907
_0543
Echvi_0544: Echvi_0544 - DNA-binding transcriptional activator of the SARP family, at 608,381 to 610,894
_0544
Position (kb) 607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 606.560 kb on + strand, within Echvi_0542 at 606.560 kb on + strand, within Echvi_0542 at 606.569 kb on + strand, within Echvi_0542 at 606.602 kb on + strand, within Echvi_0542 at 606.638 kb on + strand, within Echvi_0542 at 606.695 kb on + strand, within Echvi_0542 at 606.695 kb on + strand, within Echvi_0542 at 606.696 kb on - strand, within Echvi_0542 at 606.696 kb on - strand, within Echvi_0542 at 606.696 kb on - strand, within Echvi_0542 at 606.696 kb on - strand, within Echvi_0542 at 606.697 kb on + strand, within Echvi_0542 at 606.697 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.727 kb on + strand, within Echvi_0542 at 606.728 kb on - strand, within Echvi_0542 at 606.728 kb on - strand, within Echvi_0542 at 606.728 kb on - strand, within Echvi_0542 at 606.728 kb on - strand, within Echvi_0542 at 606.728 kb on - strand, within Echvi_0542 at 606.729 kb on - strand, within Echvi_0542 at 606.730 kb on + strand, within Echvi_0542 at 606.730 kb on + strand, within Echvi_0542 at 606.731 kb on - strand, within Echvi_0542 at 606.731 kb on - strand, within Echvi_0542 at 606.733 kb on - strand, within Echvi_0542 at 606.740 kb on + strand, within Echvi_0542 at 606.740 kb on + strand, within Echvi_0542 at 606.740 kb on + strand, within Echvi_0542 at 606.740 kb on + strand, within Echvi_0542 at 606.741 kb on - strand, within Echvi_0542 at 606.741 kb on - strand, within Echvi_0542 at 606.741 kb on - strand, within Echvi_0542 at 606.791 kb on + strand, within Echvi_0542 at 606.792 kb on - strand, within Echvi_0542 at 606.902 kb on + strand, within Echvi_0542 at 606.903 kb on - strand, within Echvi_0542 at 606.975 kb on + strand, within Echvi_0542 at 606.975 kb on + strand, within Echvi_0542 at 606.975 kb on + strand, within Echvi_0542 at 606.976 kb on - strand, within Echvi_0542 at 606.976 kb on - strand, within Echvi_0542 at 607.024 kb on + strand, within Echvi_0542 at 607.024 kb on + strand, within Echvi_0542 at 607.122 kb on + strand, within Echvi_0542 at 607.122 kb on + strand, within Echvi_0542 at 607.123 kb on - strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.159 kb on + strand, within Echvi_0542 at 607.160 kb on - strand, within Echvi_0542 at 607.160 kb on - strand, within Echvi_0542 at 607.160 kb on - strand, within Echvi_0542 at 607.160 kb on - strand, within Echvi_0542 at 607.160 kb on - strand, within Echvi_0542 at 607.206 kb on + strand at 607.206 kb on + strand at 607.207 kb on - strand at 607.257 kb on - strand at 607.284 kb on + strand at 607.285 kb on - strand at 607.354 kb on + strand at 607.354 kb on + strand at 607.383 kb on + strand at 607.422 kb on + strand at 607.422 kb on + strand at 607.426 kb on + strand at 607.426 kb on + strand at 607.433 kb on + strand at 607.443 kb on - strand at 607.467 kb on + strand at 607.467 kb on + strand at 607.494 kb on - strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.498 kb on + strand at 607.499 kb on - strand at 607.499 kb on - strand at 607.499 kb on - strand at 607.499 kb on - strand at 607.501 kb on + strand at 607.501 kb on + strand at 607.502 kb on - strand at 607.502 kb on - strand at 607.502 kb on - strand at 607.503 kb on + strand at 607.503 kb on + strand at 607.520 kb on + strand at 607.521 kb on - strand at 607.524 kb on + strand at 607.525 kb on - strand at 607.542 kb on + strand, within Echvi_0543 at 607.542 kb on + strand, within Echvi_0543 at 607.543 kb on - strand, within Echvi_0543 at 607.563 kb on - strand, within Echvi_0543 at 607.608 kb on + strand, within Echvi_0543 at 607.609 kb on - strand, within Echvi_0543 at 607.612 kb on + strand, within Echvi_0543 at 607.613 kb on - strand, within Echvi_0543 at 607.661 kb on + strand, within Echvi_0543 at 607.754 kb on + strand, within Echvi_0543 at 607.755 kb on - strand, within Echvi_0543 at 607.799 kb on - strand, within Echvi_0543 at 607.871 kb on + strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.872 kb on - strand at 607.882 kb on - strand at 607.882 kb on - strand at 607.882 kb on - strand at 607.923 kb on + strand at 607.924 kb on - strand at 607.957 kb on + strand at 607.960 kb on + strand at 607.961 kb on - strand at 607.982 kb on - strand at 607.990 kb on + strand at 607.991 kb on - strand at 607.991 kb on - strand at 607.995 kb on + strand at 608.029 kb on + strand at 608.030 kb on - strand at 608.037 kb on + strand at 608.051 kb on - strand at 608.063 kb on - strand at 608.063 kb on - strand at 608.086 kb on + strand at 608.123 kb on - strand at 608.161 kb on + strand at 608.181 kb on + strand at 608.193 kb on + strand at 608.193 kb on + strand at 608.193 kb on + strand at 608.193 kb on + strand at 608.193 kb on + strand at 608.241 kb on - strand at 608.246 kb on + strand at 608.255 kb on - strand at 608.255 kb on - strand at 608.255 kb on - strand at 608.284 kb on + strand at 608.284 kb on + strand at 608.285 kb on - strand at 608.308 kb on + strand at 608.329 kb on - strand at 608.329 kb on - strand at 608.329 kb on - strand at 608.331 kb on + strand at 608.332 kb on - strand at 608.337 kb on + strand at 608.337 kb on + strand at 608.338 kb on - strand at 608.338 kb on - strand at 608.338 kb on - strand at 608.338 kb on - strand at 608.338 kb on - strand at 608.352 kb on + strand at 608.407 kb on - strand at 608.410 kb on - strand at 608.410 kb on - strand at 608.432 kb on - strand at 608.439 kb on + strand at 608.439 kb on + strand at 608.448 kb on + strand at 608.449 kb on - strand at 608.507 kb on + strand at 608.507 kb on + strand at 608.507 kb on + strand at 608.507 kb on + strand at 608.507 kb on + strand at 608.508 kb on - strand at 608.508 kb on - strand at 608.508 kb on - strand at 608.508 kb on - strand at 608.509 kb on + strand at 608.510 kb on - strand at 608.510 kb on - strand at 608.574 kb on + strand at 608.574 kb on + strand at 608.574 kb on + strand at 608.597 kb on + strand at 608.597 kb on + strand at 608.599 kb on + strand at 608.600 kb on - strand at 608.643 kb on + strand, within Echvi_0544 at 608.643 kb on + strand, within Echvi_0544 at 608.678 kb on - strand, within Echvi_0544 at 608.741 kb on - strand, within Echvi_0544 at 608.848 kb on + strand, within Echvi_0544 at 608.849 kb on - strand, within Echvi_0544 at 608.852 kb on + strand, within Echvi_0544 at 608.853 kb on - strand, within Echvi_0544 at 608.853 kb on - strand, within Echvi_0544
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM remove 606,560 + Echvi_0542 0.32 +0.6 606,560 + Echvi_0542 0.32 -2.4 606,569 + Echvi_0542 0.32 -1.9 606,602 + Echvi_0542 0.35 -0.0 606,638 + Echvi_0542 0.39 -1.7 606,695 + Echvi_0542 0.44 -1.7 606,695 + Echvi_0542 0.44 -0.1 606,696 - Echvi_0542 0.44 +1.1 606,696 - Echvi_0542 0.44 +1.3 606,696 - Echvi_0542 0.44 -1.7 606,696 - Echvi_0542 0.44 -2.0 606,697 + Echvi_0542 0.44 -0.2 606,697 + Echvi_0542 0.44 -1.4 606,727 + Echvi_0542 0.47 -0.4 606,727 + Echvi_0542 0.47 -1.3 606,727 + Echvi_0542 0.47 -1.0 606,727 + Echvi_0542 0.47 +0.1 606,727 + Echvi_0542 0.47 -0.4 606,727 + Echvi_0542 0.47 +0.2 606,727 + Echvi_0542 0.47 -0.2 606,728 - Echvi_0542 0.47 -0.6 606,728 - Echvi_0542 0.47 -0.0 606,728 - Echvi_0542 0.47 -2.0 606,728 - Echvi_0542 0.47 -0.9 606,728 - Echvi_0542 0.47 -2.3 606,729 - Echvi_0542 0.47 +1.0 606,730 + Echvi_0542 0.47 -1.3 606,730 + Echvi_0542 0.47 +0.9 606,731 - Echvi_0542 0.47 -0.6 606,731 - Echvi_0542 0.47 -1.6 606,733 - Echvi_0542 0.47 +0.4 606,740 + Echvi_0542 0.48 +0.3 606,740 + Echvi_0542 0.48 -2.7 606,740 + Echvi_0542 0.48 -0.8 606,740 + Echvi_0542 0.48 +0.4 606,741 - Echvi_0542 0.48 +0.1 606,741 - Echvi_0542 0.48 -1.0 606,741 - Echvi_0542 0.48 +1.0 606,791 + Echvi_0542 0.53 +0.6 606,792 - Echvi_0542 0.53 -3.2 606,902 + Echvi_0542 0.63 -1.0 606,903 - Echvi_0542 0.63 +0.0 606,975 + Echvi_0542 0.70 -0.4 606,975 + Echvi_0542 0.70 -0.2 606,975 + Echvi_0542 0.70 -0.7 606,976 - Echvi_0542 0.70 -0.6 606,976 - Echvi_0542 0.70 -0.7 607,024 + Echvi_0542 0.74 +0.2 607,024 + Echvi_0542 0.74 -0.2 607,122 + Echvi_0542 0.83 -0.1 607,122 + Echvi_0542 0.83 -0.8 607,123 - Echvi_0542 0.83 +0.0 607,159 + Echvi_0542 0.86 -0.1 607,159 + Echvi_0542 0.86 -1.9 607,159 + Echvi_0542 0.86 +1.7 607,159 + Echvi_0542 0.86 +0.9 607,159 + Echvi_0542 0.86 -1.8 607,159 + Echvi_0542 0.86 +2.1 607,160 - Echvi_0542 0.86 -0.8 607,160 - Echvi_0542 0.86 -2.7 607,160 - Echvi_0542 0.86 -1.3 607,160 - Echvi_0542 0.86 +0.1 607,160 - Echvi_0542 0.86 +0.2 607,206 + -0.1 607,206 + +1.1 607,207 - -0.7 607,257 - -2.0 607,284 + +0.1 607,285 - -0.5 607,354 + -0.4 607,354 + -2.0 607,383 + -1.9 607,422 + -0.2 607,422 + +0.6 607,426 + +0.1 607,426 + -0.7 607,433 + +1.3 607,443 - -1.4 607,467 + +0.5 607,467 + -0.4 607,494 - -1.6 607,498 + +0.1 607,498 + -0.1 607,498 + -0.7 607,498 + -3.5 607,498 + +0.2 607,498 + -1.3 607,498 + +0.6 607,498 + -1.3 607,498 + -0.1 607,498 + +0.2 607,498 + +0.9 607,499 - +1.9 607,499 - +0.4 607,499 - +0.0 607,499 - -1.3 607,501 + +0.6 607,501 + -1.7 607,502 - -0.1 607,502 - -0.7 607,502 - +0.7 607,503 + -0.7 607,503 + +1.0 607,520 + -0.5 607,521 - -0.9 607,524 + +1.3 607,525 - +0.6 607,542 + Echvi_0543 0.10 -0.2 607,542 + Echvi_0543 0.10 +0.3 607,543 - Echvi_0543 0.11 -0.3 607,563 - Echvi_0543 0.15 +0.5 607,608 + Echvi_0543 0.26 -0.6 607,609 - Echvi_0543 0.27 +1.0 607,612 + Echvi_0543 0.27 -1.5 607,613 - Echvi_0543 0.28 +1.2 607,661 + Echvi_0543 0.39 +0.1 607,754 + Echvi_0543 0.62 +0.3 607,755 - Echvi_0543 0.62 +0.7 607,799 - Echvi_0543 0.73 +0.4 607,871 + +0.5 607,871 + +4.9 607,871 + -1.5 607,871 + +0.4 607,872 - +0.1 607,882 - +0.2 607,882 - -1.5 607,882 - +1.0 607,923 + +2.1 607,924 - -1.6 607,957 + -0.6 607,960 + -2.5 607,961 - -1.6 607,982 - -1.3 607,990 + -0.1 607,991 - +0.0 607,991 - -1.6 607,995 + -0.8 608,029 + -0.8 608,030 - +0.3 608,037 + +0.3 608,051 - +0.3 608,063 - -0.4 608,063 - -0.6 608,086 + +0.3 608,123 - -0.3 608,161 + +0.3 608,181 + +0.1 608,193 + -0.5 608,193 + -0.1 608,193 + -0.1 608,193 + +1.3 608,193 + +0.2 608,241 - +1.7 608,246 + +0.1 608,255 - -1.3 608,255 - -1.9 608,255 - +0.3 608,284 + +2.2 608,284 + +0.1 608,285 - -1.2 608,308 + -1.3 608,329 - -0.8 608,329 - +0.2 608,329 - +1.3 608,331 + -0.4 608,332 - +0.2 608,337 + -0.3 608,337 + -0.7 608,338 - +1.3 608,338 - +0.9 608,338 - -1.2 608,338 - +1.3 608,338 - +0.3 608,352 + +0.4 608,407 - +0.2 608,410 - -1.3 608,410 - -0.8 608,432 - +0.6 608,439 + +1.0 608,439 + +0.4 608,448 + -1.8 608,449 - -0.0 608,507 + +0.2 608,507 + +1.1 608,507 + -2.9 608,507 + -0.9 608,507 + -1.8 608,508 - -0.4 608,508 - +0.0 608,508 - -0.5 608,508 - -0.7 608,509 + -1.3 608,510 - -0.8 608,510 - +0.1 608,574 + -1.9 608,574 + -0.4 608,574 + +0.1 608,597 + +0.2 608,597 + +0.5 608,599 + -0.1 608,600 - -0.1 608,643 + Echvi_0544 0.10 +0.2 608,643 + Echvi_0544 0.10 -1.3 608,678 - Echvi_0544 0.12 +0.4 608,741 - Echvi_0544 0.14 -0.3 608,848 + Echvi_0544 0.19 -2.2 608,849 - Echvi_0544 0.19 -0.3 608,852 + Echvi_0544 0.19 +1.1 608,853 - Echvi_0544 0.19 +1.6 608,853 - Echvi_0544 0.19 -0.2
Or see this region's nucleotide sequence