Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21560 and CA264_21565 are separated by 103 nucleotides CA264_21565 and CA264_21570 are separated by 109 nucleotides CA264_21570 and CA264_21575 are separated by 68 nucleotides
CA264_21560: CA264_21560 - copper-translocating P-type ATPase, at 179,123 to 181,267
_21560
CA264_21565: CA264_21565 - hypothetical protein, at 181,371 to 181,721
_21565
CA264_21570: CA264_21570 - hypothetical protein, at 181,831 to 182,100
_21570
CA264_21575: CA264_21575 - (2Fe-2S)-binding protein, at 182,169 to 183,701
_21575
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.858 kb on + strand, within CA264_21560 at 180.885 kb on + strand, within CA264_21560 at 180.981 kb on + strand, within CA264_21560 at 181.023 kb on + strand, within CA264_21560 at 181.029 kb on + strand, within CA264_21560 at 181.107 kb on + strand at 181.121 kb on + strand at 181.121 kb on + strand at 181.122 kb on - strand at 181.158 kb on + strand at 181.158 kb on + strand at 181.160 kb on + strand at 181.160 kb on + strand at 181.160 kb on + strand at 181.161 kb on - strand at 181.161 kb on - strand at 181.204 kb on - strand at 181.234 kb on + strand at 181.261 kb on + strand at 181.265 kb on + strand at 181.266 kb on - strand at 181.269 kb on - strand at 181.271 kb on + strand at 181.272 kb on - strand at 181.272 kb on - strand at 181.272 kb on - strand at 181.281 kb on + strand at 181.281 kb on + strand at 181.282 kb on - strand at 181.287 kb on - strand at 181.296 kb on + strand at 181.297 kb on - strand at 181.298 kb on + strand at 181.298 kb on + strand at 181.299 kb on - strand at 181.315 kb on - strand at 181.329 kb on - strand at 181.344 kb on + strand at 181.345 kb on - strand at 181.345 kb on - strand at 181.346 kb on + strand at 181.346 kb on + strand at 181.346 kb on + strand at 181.347 kb on - strand at 181.414 kb on + strand, within CA264_21565 at 181.414 kb on + strand, within CA264_21565 at 181.414 kb on + strand, within CA264_21565 at 181.415 kb on - strand, within CA264_21565 at 181.418 kb on - strand, within CA264_21565 at 181.418 kb on - strand, within CA264_21565 at 181.484 kb on + strand, within CA264_21565 at 181.505 kb on + strand, within CA264_21565 at 181.506 kb on - strand, within CA264_21565 at 181.534 kb on + strand, within CA264_21565 at 181.534 kb on + strand, within CA264_21565 at 181.534 kb on + strand, within CA264_21565 at 181.534 kb on + strand, within CA264_21565 at 181.538 kb on + strand, within CA264_21565 at 181.539 kb on - strand, within CA264_21565 at 181.539 kb on - strand, within CA264_21565 at 181.543 kb on + strand, within CA264_21565 at 181.543 kb on + strand, within CA264_21565 at 181.543 kb on + strand, within CA264_21565 at 181.544 kb on - strand, within CA264_21565 at 181.588 kb on + strand, within CA264_21565 at 181.591 kb on + strand, within CA264_21565 at 181.777 kb on - strand at 181.787 kb on + strand at 181.788 kb on - strand at 181.808 kb on - strand at 181.818 kb on + strand at 181.819 kb on - strand at 181.821 kb on + strand at 181.841 kb on + strand at 181.841 kb on + strand at 181.842 kb on - strand at 181.842 kb on - strand at 181.846 kb on - strand at 181.846 kb on - strand at 181.846 kb on - strand at 181.865 kb on + strand, within CA264_21570 at 181.865 kb on + strand, within CA264_21570 at 181.866 kb on - strand, within CA264_21570 at 181.866 kb on - strand, within CA264_21570 at 181.870 kb on + strand, within CA264_21570 at 181.931 kb on + strand, within CA264_21570 at 181.931 kb on + strand, within CA264_21570 at 181.932 kb on - strand, within CA264_21570 at 182.004 kb on + strand, within CA264_21570 at 182.039 kb on - strand, within CA264_21570 at 182.105 kb on - strand at 182.139 kb on + strand at 182.144 kb on - strand at 182.147 kb on + strand at 182.148 kb on - strand at 182.163 kb on + strand at 182.164 kb on - strand at 182.189 kb on + strand at 182.192 kb on - strand at 182.248 kb on - strand at 182.394 kb on + strand, within CA264_21575 at 182.420 kb on + strand, within CA264_21575 at 182.420 kb on + strand, within CA264_21575 at 182.420 kb on + strand, within CA264_21575 at 182.421 kb on - strand, within CA264_21575 at 182.426 kb on - strand, within CA264_21575 at 182.432 kb on + strand, within CA264_21575 at 182.487 kb on - strand, within CA264_21575 at 182.487 kb on - strand, within CA264_21575 at 182.494 kb on + strand, within CA264_21575 at 182.495 kb on - strand, within CA264_21575 at 182.550 kb on + strand, within CA264_21575 at 182.608 kb on + strand, within CA264_21575 at 182.609 kb on - strand, within CA264_21575 at 182.660 kb on + strand, within CA264_21575 at 182.716 kb on - strand, within CA264_21575 at 182.788 kb on + strand, within CA264_21575 at 182.808 kb on - strand, within CA264_21575 at 182.833 kb on + strand, within CA264_21575 at 182.834 kb on - strand, within CA264_21575 at 182.858 kb on + strand, within CA264_21575 at 182.880 kb on + strand, within CA264_21575 at 182.964 kb on + strand, within CA264_21575 at 182.964 kb on + strand, within CA264_21575 at 182.965 kb on - strand, within CA264_21575 at 182.975 kb on - strand at 182.992 kb on - strand, within CA264_21575 at 183.074 kb on + strand, within CA264_21575 at 183.075 kb on - strand, within CA264_21575
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 180,858 + CA264_21560 0.81 -0.3 180,885 + CA264_21560 0.82 -0.1 180,981 + CA264_21560 0.87 -0.5 181,023 + CA264_21560 0.89 -1.2 181,029 + CA264_21560 0.89 +0.2 181,107 + -0.5 181,121 + +0.5 181,121 + -0.2 181,122 - +0.1 181,158 + -0.4 181,158 + -0.1 181,160 + -0.3 181,160 + -0.7 181,160 + -0.4 181,161 - -0.3 181,161 - -0.1 181,204 - +0.1 181,234 + -0.5 181,261 + +0.0 181,265 + +0.8 181,266 - -0.2 181,269 - +1.5 181,271 + -0.2 181,272 - +0.2 181,272 - -0.7 181,272 - +0.1 181,281 + -0.3 181,281 + +0.3 181,282 - -0.3 181,287 - +1.8 181,296 + +0.5 181,297 - -0.0 181,298 + +0.2 181,298 + +0.4 181,299 - -2.4 181,315 - +0.9 181,329 - -0.6 181,344 + -0.7 181,345 - +0.9 181,345 - -0.7 181,346 + -0.3 181,346 + -0.9 181,346 + +1.1 181,347 - -0.4 181,414 + CA264_21565 0.12 -0.0 181,414 + CA264_21565 0.12 -0.5 181,414 + CA264_21565 0.12 -1.2 181,415 - CA264_21565 0.13 -0.1 181,418 - CA264_21565 0.13 -0.3 181,418 - CA264_21565 0.13 +0.2 181,484 + CA264_21565 0.32 -0.2 181,505 + CA264_21565 0.38 -1.2 181,506 - CA264_21565 0.38 +0.5 181,534 + CA264_21565 0.46 -0.1 181,534 + CA264_21565 0.46 +0.7 181,534 + CA264_21565 0.46 +2.0 181,534 + CA264_21565 0.46 -1.9 181,538 + CA264_21565 0.48 +0.5 181,539 - CA264_21565 0.48 -0.4 181,539 - CA264_21565 0.48 +1.0 181,543 + CA264_21565 0.49 -1.1 181,543 + CA264_21565 0.49 -0.1 181,543 + CA264_21565 0.49 -0.1 181,544 - CA264_21565 0.49 +0.1 181,588 + CA264_21565 0.62 +0.9 181,591 + CA264_21565 0.63 -0.1 181,777 - +0.2 181,787 + -1.6 181,788 - -0.7 181,808 - -1.7 181,818 + -0.9 181,819 - -0.2 181,821 + -0.0 181,841 + -0.7 181,841 + +0.4 181,842 - +0.0 181,842 - +0.3 181,846 - +0.1 181,846 - -0.5 181,846 - -0.7 181,865 + CA264_21570 0.13 +0.8 181,865 + CA264_21570 0.13 -1.4 181,866 - CA264_21570 0.13 -0.6 181,866 - CA264_21570 0.13 +0.9 181,870 + CA264_21570 0.14 +0.1 181,931 + CA264_21570 0.37 -0.1 181,931 + CA264_21570 0.37 +0.5 181,932 - CA264_21570 0.37 +0.0 182,004 + CA264_21570 0.64 -0.2 182,039 - CA264_21570 0.77 -0.0 182,105 - -0.1 182,139 + -0.5 182,144 - +0.1 182,147 + +0.9 182,148 - +0.1 182,163 + +0.7 182,164 - -0.6 182,189 + -0.2 182,192 - -0.5 182,248 - +0.1 182,394 + CA264_21575 0.15 +0.2 182,420 + CA264_21575 0.16 +0.6 182,420 + CA264_21575 0.16 -0.4 182,420 + CA264_21575 0.16 +0.2 182,421 - CA264_21575 0.16 -0.4 182,426 - CA264_21575 0.17 +1.0 182,432 + CA264_21575 0.17 +1.1 182,487 - CA264_21575 0.21 +0.2 182,487 - CA264_21575 0.21 +0.1 182,494 + CA264_21575 0.21 +0.7 182,495 - CA264_21575 0.21 +0.2 182,550 + CA264_21575 0.25 +0.5 182,608 + CA264_21575 0.29 -0.4 182,609 - CA264_21575 0.29 -1.5 182,660 + CA264_21575 0.32 +1.5 182,716 - CA264_21575 0.36 +1.3 182,788 + CA264_21575 0.40 -0.2 182,808 - CA264_21575 0.42 -0.0 182,833 + CA264_21575 0.43 -0.5 182,834 - CA264_21575 0.43 +0.9 182,858 + CA264_21575 0.45 +0.7 182,880 + CA264_21575 0.46 +1.1 182,964 + CA264_21575 0.52 -1.1 182,964 + CA264_21575 0.52 -0.2 182,965 - CA264_21575 0.52 +0.8 182,975 - +1.5 182,992 - CA264_21575 0.54 -0.3 183,074 + CA264_21575 0.59 -0.4 183,075 - CA264_21575 0.59 -0.2
Or see this region's nucleotide sequence