Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16795

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16790 and CA264_16795 are separated by 71 nucleotidesCA264_16795 and CA264_16800 are separated by 626 nucleotides CA264_16790: CA264_16790 - 50S ribosomal protein L27, at 3,918,160 to 3,918,429 _16790 CA264_16795: CA264_16795 - 50S ribosomal protein L21, at 3,918,501 to 3,918,809 _16795 CA264_16800: CA264_16800 - ribonucleoside-diphosphate reductase, at 3,919,436 to 3,920,395 _16800 Position (kb) 3918 3919Strain fitness (log2 ratio) -1 0 1at 3917.740 kb on - strandat 3917.748 kb on - strandat 3917.748 kb on - strandat 3917.748 kb on - strandat 3917.750 kb on - strandat 3917.750 kb on - strandat 3917.750 kb on - strandat 3917.804 kb on - strandat 3917.810 kb on - strandat 3917.816 kb on - strandat 3917.870 kb on - strandat 3917.881 kb on - strandat 3917.885 kb on - strandat 3917.922 kb on + strandat 3917.927 kb on + strandat 3917.927 kb on + strandat 3918.021 kb on - strandat 3918.039 kb on - strandat 3918.072 kb on - strandat 3918.098 kb on - strandat 3918.100 kb on - strandat 3918.148 kb on - strandat 3918.940 kb on + strandat 3918.940 kb on + strandat 3919.311 kb on + strandat 3919.313 kb on + strandat 3919.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,917,740 - +0.3
3,917,748 - +0.2
3,917,748 - +0.2
3,917,748 - -0.8
3,917,750 - -0.4
3,917,750 - -0.5
3,917,750 - +0.1
3,917,804 - +0.0
3,917,810 - +0.2
3,917,816 - -0.4
3,917,870 - -0.2
3,917,881 - +1.1
3,917,885 - +0.1
3,917,922 + +0.3
3,917,927 + -0.2
3,917,927 + -0.2
3,918,021 - -0.7
3,918,039 - -0.3
3,918,072 - +0.8
3,918,098 - +0.3
3,918,100 - -0.3
3,918,148 - -0.9
3,918,940 + -1.0
3,918,940 + -0.3
3,919,311 + +0.3
3,919,313 + -0.6
3,919,369 - +0.1

Or see this region's nucleotide sequence