Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16785

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,912,394	+		CA264_16780	0.22	+0.1
3,912,394	+		CA264_16780	0.22	+0.7
3,912,394	+		CA264_16780	0.22	-0.0
3,912,395	-				+1.7
3,912,482	+		CA264_16780	0.31	-0.6
3,912,482	+		CA264_16780	0.31	+0.3
3,912,511	+		CA264_16780	0.34	-0.2
3,912,512	-		CA264_16780	0.35	-0.4
3,912,660	-		CA264_16780	0.50	-0.6
3,912,708	-		CA264_16780	0.55	-0.2
3,912,711	+		CA264_16780	0.55	-1.1
3,912,711	+		CA264_16780	0.55	+1.7
3,912,712	-		CA264_16780	0.55	-1.4
3,912,780	+		CA264_16780	0.63	-1.1
3,912,780	+		CA264_16780	0.63	-1.4
3,912,781	-		CA264_16780	0.63	-1.4
3,912,781	-		CA264_16780	0.63	-1.6
3,912,784	+		CA264_16780	0.63	+0.2
3,912,873	+		CA264_16780	0.72	-1.3
3,912,873	+		CA264_16780	0.72	-0.6
3,912,874	-		CA264_16780	0.72	-0.6
3,912,874	-		CA264_16780	0.72	-0.4
3,912,874	-		CA264_16780	0.72	-0.2
3,912,875	+		CA264_16780	0.73	-1.3
3,912,875	+		CA264_16780	0.73	-0.8
3,912,876	-		CA264_16780	0.73	+0.2
3,912,876	-		CA264_16780	0.73	-0.3
3,912,927	+		CA264_16780	0.78	-0.7
3,912,965	+		CA264_16780	0.82	-1.1
3,912,966	-		CA264_16780	0.82	+1.1
3,912,966	-		CA264_16780	0.82	-0.6
3,913,030	+		CA264_16780	0.89	+0.2
3,913,031	-		CA264_16780	0.89	-0.9
3,913,032	+		CA264_16780	0.89	-0.5
3,913,079	-				-0.3
3,913,089	+				-0.2
3,913,090	-				+0.4
3,913,158	+				-0.3
3,913,161	-				-0.2
3,913,161	-				-1.8
3,913,167	+				+1.0
3,913,168	-				-0.3
3,913,168	-				+0.8
3,913,168	-				-0.9
3,913,168	-				-0.6
3,913,168	-				-0.9
3,913,181	+				-0.3
3,913,182	-				-0.9
3,913,222	+				+1.0
3,913,223	-				+0.2
3,913,231	+				-0.1
3,913,241	-				-0.2
3,913,268	+				-0.7
3,913,269	-				-1.1
3,913,275	-				-1.0
3,913,275	-				-0.6
3,913,308	-				-0.6
3,913,412	+				-0.2
3,913,413	-				-2.8
3,913,436	+				-0.3
3,913,483	-				-0.5
3,913,486	+				-0.5
3,913,489	-				-0.0
3,913,543	-				+0.1
3,913,698	+		CA264_16785	0.11	-1.8
3,913,752	-		CA264_16785	0.13	+0.1
3,913,807	-		CA264_16785	0.14	+0.0
3,913,808	+		CA264_16785	0.14	-0.2
3,913,808	+		CA264_16785	0.14	-0.1
3,913,809	-		CA264_16785	0.14	-0.7
3,913,943	-		CA264_16785	0.18	+0.3
3,914,021	-		CA264_16785	0.20	-0.6
3,914,178	-		CA264_16785	0.24	-1.2
3,914,188	+		CA264_16785	0.25	-0.0
3,914,188	+		CA264_16785	0.25	-1.6
3,914,189	-		CA264_16785	0.25	-1.7
3,914,240	-		CA264_16785	0.26	-0.7
3,914,240	-		CA264_16785	0.26	-0.6
3,914,245	-		CA264_16785	0.26	-1.0
3,914,246	+		CA264_16785	0.26	-0.7
3,914,246	+		CA264_16785	0.26	-0.7
3,914,247	-		CA264_16785	0.26	+1.2
3,914,247	-		CA264_16785	0.26	-0.2
3,914,372	-		CA264_16785	0.30	-0.3
3,914,434	-		CA264_16785	0.31	-0.3
3,914,475	+		CA264_16785	0.32	-0.2
3,914,538	-		CA264_16785	0.34	+2.1
3,914,538	-		CA264_16785	0.34	+0.3
3,914,539	+		CA264_16785	0.34	+0.5
3,914,540	-		CA264_16785	0.34	+1.9
3,914,586	+		CA264_16785	0.35	+0.7
3,914,586	+		CA264_16785	0.35	-0.8
3,914,586	+		CA264_16785	0.35	-0.1
3,914,590	+		CA264_16785	0.35	-0.3
3,914,590	+		CA264_16785	0.35	+0.5
3,914,591	-		CA264_16785	0.35	-0.3
3,914,650	+		CA264_16785	0.37	-0.5
3,914,661	-		CA264_16785	0.37	-0.5
3,914,664	+		CA264_16785	0.37	-0.2
3,914,665	-		CA264_16785	0.37	+0.5
3,914,665	-		CA264_16785	0.37	+0.9
3,914,697	+		CA264_16785	0.38	+0.5
3,914,710	+		CA264_16785	0.39	-1.0
3,914,710	+		CA264_16785	0.39	+2.3
3,914,710	+		CA264_16785	0.39	-0.9
3,914,711	-		CA264_16785	0.39	-1.3
3,914,711	-		CA264_16785	0.39	-0.9
3,914,711	-		CA264_16785	0.39	-0.2
3,914,885	-		CA264_16785	0.43	+0.3
3,914,885	-		CA264_16785	0.43	+0.9
3,914,972	+		CA264_16785	0.46	+0.2
3,914,985	+		CA264_16785	0.46	-0.5
3,914,986	-		CA264_16785	0.46	+0.1
3,915,020	-		CA264_16785	0.47	+0.2
3,915,040	-		CA264_16785	0.48	-0.6
3,915,043	-		CA264_16785	0.48	-0.1
3,915,063	+		CA264_16785	0.48	+1.1
3,915,093	+		CA264_16785	0.49	+0.1
3,915,094	-		CA264_16785	0.49	-0.1
3,915,233	+		CA264_16785	0.53	-1.8
3,915,233	+		CA264_16785	0.53	-0.4
3,915,233	+		CA264_16785	0.53	-0.4
3,915,234	-		CA264_16785	0.53	-1.7
3,915,234	-		CA264_16785	0.53	-0.5
3,915,237	-		CA264_16785	0.53	+0.7
3,915,238	+		CA264_16785	0.53	-0.5
3,915,239	-		CA264_16785	0.53	+1.4
3,915,304	+		CA264_16785	0.55	-0.7
3,915,304	+		CA264_16785	0.55	+0.1
3,915,305	-		CA264_16785	0.55	+0.3
3,915,317	-		CA264_16785	0.55	-0.5
3,915,377	+		CA264_16785	0.57	+0.0
3,915,384	+		CA264_16785	0.57	-0.3
3,915,394	+		CA264_16785	0.57	-0.6
3,915,394	+		CA264_16785	0.57	-1.3
3,915,395	-		CA264_16785	0.57	+0.3
3,915,395	-		CA264_16785	0.57	-0.4
3,915,396	+		CA264_16785	0.57	+0.3
3,915,415	+		CA264_16785	0.58	-0.3
3,915,415	+		CA264_16785	0.58	-1.0
3,915,416	-		CA264_16785	0.58	+0.1
3,915,501	+		CA264_16785	0.60	-0.6
3,915,613	+		CA264_16785	0.63	+1.0
3,915,681	+		CA264_16785	0.65	-0.3
3,915,790	+		CA264_16785	0.68	-0.5
3,915,791	+		CA264_16785	0.68	-2.1
3,915,938	+		CA264_16785	0.72	-0.1
3,915,938	+		CA264_16785	0.72	+0.3
3,915,982	+		CA264_16785	0.73	-0.3
3,916,008	-		CA264_16785	0.74	+0.8
3,916,019	-		CA264_16785	0.74	-1.3
3,916,030	+		CA264_16785	0.74	+0.1
3,916,031	-		CA264_16785	0.74	-0.9
3,916,031	-		CA264_16785	0.74	+0.3
3,916,072	+		CA264_16785	0.75	-1.3
3,916,098	-		CA264_16785	0.76	-0.3
3,916,187	+		CA264_16785	0.78	+1.5
3,916,188	-		CA264_16785	0.78	-0.2
3,916,215	+		CA264_16785	0.79	+0.3
3,916,266	+		CA264_16785	0.81	+0.3
3,916,266	+		CA264_16785	0.81	-0.3
3,916,266	+		CA264_16785	0.81	+0.7
3,916,270	+		CA264_16785	0.81	-0.8
3,916,271	-		CA264_16785	0.81	+1.6
3,916,271	-		CA264_16785	0.81	-0.8
3,916,271	-		CA264_16785	0.81	+0.8
3,916,272	+		CA264_16785	0.81	-0.9
3,916,272	+		CA264_16785	0.81	+0.6
3,916,395	-		CA264_16785	0.84	+0.4
3,916,422	+		CA264_16785	0.85	+0.3
3,916,423	-		CA264_16785	0.85	+0.1
3,916,423	-		CA264_16785	0.85	+0.9
3,916,456	+		CA264_16785	0.86	-0.2
3,916,457	-		CA264_16785	0.86	-0.2
3,916,503	-		CA264_16785	0.87	+1.2
3,916,513	+		CA264_16785	0.87	-1.2
3,916,552	+		CA264_16785	0.88	-0.9
3,916,553	-		CA264_16785	0.88	+0.4
3,916,681	+				+1.0
3,916,688	+				-0.8
3,916,688	+				-0.8
3,916,690	+				-0.3
3,916,690	+				-0.9
3,916,691	-				-0.5
3,916,691	-				-0.4
3,916,691	-				-0.3
3,916,693	+				-0.4
3,916,694	-				+0.4
3,916,694	-				+0.0
3,916,694	-				+0.3
3,916,778	+				+0.8
3,916,789	+				-0.9
3,916,790	-				+0.5
3,916,790	-				+0.3
3,916,801	-				-0.9
3,916,963	-				-0.1
3,916,967	-				-0.5
3,916,975	+				+0.4
3,916,976	-				+1.0
3,917,040	+				-0.2
3,917,040	+				-0.4
3,917,040	+				-0.1
3,917,040	+				-0.2
3,917,061	+				-0.1
3,917,061	+				+1.9
3,917,062	-				+0.3
3,917,096	+				-0.9
3,917,096	+				-0.4
3,917,111	+				+0.1
3,917,111	+				-0.6
3,917,112	-				-0.7
3,917,112	-				+0.3
3,917,112	-				-0.8
3,917,112	-				+0.1
3,917,122	+				+0.9
3,917,161	-				-0.1
3,917,161	-				-1.5
3,917,175	+				+0.0
3,917,181	+				-0.7
3,917,181	+				+1.1
3,917,181	+				-0.5
3,917,182	-				+0.3
3,917,182	-				-0.8
3,917,182	-				+0.0
3,917,351	+				+0.3
3,917,352	-				-0.8
3,917,366	+				+0.1
3,917,366	+				-0.2
3,917,389	-				+0.5
3,917,390	+				+0.7
3,917,740	-				+0.3
3,917,748	-				+0.2
3,917,748	-				+0.2
3,917,748	-				-0.8
3,917,750	-				-0.4
3,917,750	-				-0.5
3,917,750	-				+0.1
3,917,804	-				+0.0
3,917,810	-				+0.2
3,917,816	-				-0.4
3,917,870	-				-0.2
3,917,881	-				+1.1
3,917,885	-				+0.1
3,917,922	+				+0.3
3,917,927	+				-0.2
3,917,927	+				-0.2