Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03565 and CA264_03570 are separated by 506 nucleotides CA264_03570 and CA264_03575 overlap by 14 nucleotides
CA264_03565: CA264_03565 - transposase, at 829,888 to 830,433
_03565
CA264_03570: CA264_03570 - hypothetical protein, at 830,940 to 831,854
_03570
CA264_03575: CA264_03575 - hypothetical protein, at 831,841 to 832,755
_03575
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.947 kb on - strand, within CA264_03565 at 830.046 kb on + strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.187 kb on + strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.309 kb on + strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.329 kb on + strand, within CA264_03565 at 830.369 kb on + strand, within CA264_03565 at 830.393 kb on + strand at 830.393 kb on + strand at 830.394 kb on - strand at 830.421 kb on - strand at 830.436 kb on - strand at 830.436 kb on - strand at 830.444 kb on - strand at 830.444 kb on - strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.449 kb on - strand at 830.450 kb on + strand at 830.451 kb on - strand at 830.452 kb on + strand at 830.453 kb on - strand at 830.453 kb on - strand at 830.496 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.521 kb on - strand at 830.541 kb on - strand at 830.562 kb on - strand at 830.653 kb on - strand at 830.718 kb on - strand at 830.718 kb on - strand at 830.718 kb on - strand at 830.725 kb on - strand at 830.824 kb on + strand at 830.827 kb on + strand at 830.828 kb on - strand at 830.862 kb on + strand at 830.880 kb on - strand at 830.891 kb on - strand at 830.891 kb on - strand at 830.893 kb on + strand at 830.902 kb on - strand at 830.907 kb on + strand at 830.907 kb on + strand at 830.908 kb on - strand at 830.911 kb on + strand at 830.912 kb on - strand at 830.918 kb on + strand at 830.918 kb on + strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.923 kb on + strand at 830.925 kb on + strand at 830.925 kb on + strand at 830.926 kb on - strand at 830.926 kb on - strand at 830.948 kb on + strand at 831.026 kb on + strand at 831.028 kb on + strand at 831.028 kb on + strand at 831.029 kb on - strand at 831.049 kb on + strand, within CA264_03570 at 831.071 kb on + strand, within CA264_03570 at 831.111 kb on + strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.168 kb on - strand at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.197 kb on - strand, within CA264_03570 at 831.223 kb on - strand, within CA264_03570 at 831.236 kb on - strand, within CA264_03570 at 831.239 kb on + strand, within CA264_03570 at 831.265 kb on + strand, within CA264_03570 at 831.266 kb on - strand, within CA264_03570 at 831.359 kb on - strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570 at 831.434 kb on - strand, within CA264_03570 at 831.445 kb on + strand, within CA264_03570 at 831.446 kb on - strand, within CA264_03570 at 831.467 kb on - strand, within CA264_03570 at 831.512 kb on + strand, within CA264_03570 at 831.513 kb on - strand, within CA264_03570 at 831.513 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.574 kb on + strand, within CA264_03570 at 831.615 kb on + strand, within CA264_03570 at 831.616 kb on - strand, within CA264_03570 at 831.617 kb on + strand, within CA264_03570 at 831.617 kb on + strand, within CA264_03570 at 831.618 kb on - strand, within CA264_03570 at 831.623 kb on + strand, within CA264_03570 at 831.623 kb on + strand, within CA264_03570 at 831.627 kb on + strand, within CA264_03570 at 831.628 kb on - strand, within CA264_03570 at 831.629 kb on + strand, within CA264_03570 at 831.629 kb on + strand, within CA264_03570 at 831.630 kb on - strand, within CA264_03570 at 831.633 kb on + strand, within CA264_03570 at 831.633 kb on + strand, within CA264_03570 at 831.680 kb on + strand, within CA264_03570 at 831.695 kb on + strand, within CA264_03570 at 831.696 kb on - strand, within CA264_03570 at 831.696 kb on - strand, within CA264_03570 at 831.698 kb on - strand, within CA264_03570 at 831.698 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.729 kb on + strand, within CA264_03570 at 831.730 kb on - strand, within CA264_03570 at 831.740 kb on + strand, within CA264_03570 at 831.751 kb on - strand, within CA264_03570 at 831.770 kb on + strand at 831.771 kb on - strand at 831.867 kb on + strand at 831.869 kb on + strand at 831.869 kb on + strand at 831.869 kb on + strand at 831.927 kb on + strand at 832.006 kb on + strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.008 kb on + strand, within CA264_03575 at 832.009 kb on - strand, within CA264_03575 at 832.009 kb on - strand, within CA264_03575 at 832.010 kb on + strand, within CA264_03575 at 832.047 kb on + strand, within CA264_03575 at 832.048 kb on - strand, within CA264_03575 at 832.064 kb on - strand, within CA264_03575 at 832.064 kb on - strand, within CA264_03575 at 832.065 kb on + strand, within CA264_03575 at 832.066 kb on - strand, within CA264_03575 at 832.212 kb on - strand, within CA264_03575 at 832.228 kb on - strand, within CA264_03575 at 832.241 kb on + strand, within CA264_03575 at 832.244 kb on + strand, within CA264_03575 at 832.263 kb on - strand, within CA264_03575 at 832.266 kb on + strand, within CA264_03575 at 832.267 kb on - strand, within CA264_03575 at 832.292 kb on + strand, within CA264_03575 at 832.292 kb on + strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.302 kb on - strand, within CA264_03575 at 832.302 kb on - strand, within CA264_03575 at 832.305 kb on + strand, within CA264_03575 at 832.305 kb on + strand, within CA264_03575 at 832.306 kb on - strand, within CA264_03575 at 832.365 kb on - strand, within CA264_03575 at 832.460 kb on - strand, within CA264_03575 at 832.460 kb on - strand, within CA264_03575 at 832.485 kb on + strand, within CA264_03575 at 832.503 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.582 kb on - strand, within CA264_03575 at 832.594 kb on - strand, within CA264_03575 at 832.653 kb on - strand, within CA264_03575 at 832.661 kb on - strand, within CA264_03575 at 832.661 kb on - strand, within CA264_03575 at 832.762 kb on - strand at 832.762 kb on - strand at 832.784 kb on + strand at 832.785 kb on - strand at 832.787 kb on + strand at 832.793 kb on - strand at 832.801 kb on + strand at 832.802 kb on - strand at 832.805 kb on + strand at 832.805 kb on + strand at 832.805 kb on + strand at 832.836 kb on - strand at 832.842 kb on + strand at 832.845 kb on - strand at 832.849 kb on + strand at 832.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 829,947 - CA264_03565 0.11 +1.3 830,046 + CA264_03565 0.29 -0.3 830,047 - CA264_03565 0.29 -0.9 830,047 - CA264_03565 0.29 +0.1 830,187 + CA264_03565 0.55 -0.2 830,190 - CA264_03565 0.55 -0.7 830,190 - CA264_03565 0.55 +0.4 830,279 + CA264_03565 0.72 -0.6 830,279 + CA264_03565 0.72 -0.6 830,280 - CA264_03565 0.72 -0.4 830,280 - CA264_03565 0.72 -0.2 830,280 - CA264_03565 0.72 -0.2 830,309 + CA264_03565 0.77 -0.2 830,326 - CA264_03565 0.80 -0.1 830,326 - CA264_03565 0.80 -0.2 830,329 + CA264_03565 0.81 +0.3 830,369 + CA264_03565 0.88 -0.2 830,393 + -0.2 830,393 + +0.9 830,394 - +1.0 830,421 - +0.1 830,436 - -0.6 830,436 - -0.2 830,444 - -0.0 830,444 - -0.7 830,448 + -0.8 830,448 + -0.4 830,448 + +0.2 830,448 + -0.4 830,448 + -0.2 830,448 + -0.9 830,449 - +0.1 830,450 + +1.0 830,451 - -0.2 830,452 + -0.2 830,453 - -0.4 830,453 - -0.5 830,496 - -0.6 830,505 - +0.2 830,505 - -1.4 830,505 - -0.5 830,521 - +2.3 830,541 - -1.4 830,562 - -0.4 830,653 - -0.1 830,718 - +1.1 830,718 - +0.9 830,718 - +0.1 830,725 - -0.3 830,824 + -0.2 830,827 + -0.4 830,828 - +0.4 830,862 + -2.3 830,880 - -0.1 830,891 - +1.0 830,891 - -0.2 830,893 + -0.0 830,902 - -0.0 830,907 + -0.5 830,907 + -0.2 830,908 - -0.4 830,911 + +1.8 830,912 - -0.9 830,918 + -0.2 830,918 + +0.1 830,919 - -0.4 830,919 - -0.4 830,919 - -0.3 830,923 + -0.1 830,925 + -0.4 830,925 + +0.3 830,926 - +0.5 830,926 - +1.4 830,948 + -0.2 831,026 + -0.5 831,028 + -1.0 831,028 + +0.1 831,029 - +0.1 831,049 + CA264_03570 0.12 -0.5 831,071 + CA264_03570 0.14 +1.1 831,111 + CA264_03570 0.19 -0.5 831,140 - CA264_03570 0.22 -0.1 831,140 - CA264_03570 0.22 +0.5 831,168 - +0.7 831,194 - CA264_03570 0.28 -1.1 831,194 - CA264_03570 0.28 +0.9 831,194 - CA264_03570 0.28 -0.6 831,197 - CA264_03570 0.28 -0.2 831,223 - CA264_03570 0.31 +0.5 831,236 - CA264_03570 0.32 -0.6 831,239 + CA264_03570 0.33 +0.6 831,265 + CA264_03570 0.36 +0.9 831,266 - CA264_03570 0.36 -1.3 831,359 - CA264_03570 0.46 -0.6 831,433 + CA264_03570 0.54 -0.0 831,433 + CA264_03570 0.54 +0.7 831,434 - CA264_03570 0.54 -0.2 831,445 + CA264_03570 0.55 -1.1 831,446 - CA264_03570 0.55 +0.8 831,467 - CA264_03570 0.58 +0.2 831,512 + CA264_03570 0.63 +0.1 831,513 - CA264_03570 0.63 -0.2 831,513 - CA264_03570 0.63 -0.2 831,517 - CA264_03570 0.63 -0.3 831,517 - CA264_03570 0.63 -0.5 831,517 - CA264_03570 0.63 -1.1 831,517 - CA264_03570 0.63 +0.1 831,574 + CA264_03570 0.69 -0.2 831,615 + CA264_03570 0.74 -0.4 831,616 - CA264_03570 0.74 -0.8 831,617 + CA264_03570 0.74 +0.7 831,617 + CA264_03570 0.74 +0.3 831,618 - CA264_03570 0.74 +0.2 831,623 + CA264_03570 0.75 +0.4 831,623 + CA264_03570 0.75 -0.1 831,627 + CA264_03570 0.75 +0.2 831,628 - CA264_03570 0.75 -0.2 831,629 + CA264_03570 0.75 +0.3 831,629 + CA264_03570 0.75 -0.6 831,630 - CA264_03570 0.75 -0.3 831,633 + CA264_03570 0.76 +0.1 831,633 + CA264_03570 0.76 -0.2 831,680 + CA264_03570 0.81 +0.1 831,695 + CA264_03570 0.83 -0.3 831,696 - CA264_03570 0.83 +0.4 831,696 - CA264_03570 0.83 +0.2 831,698 - CA264_03570 0.83 +0.5 831,698 - CA264_03570 0.83 +0.1 831,718 - CA264_03570 0.85 +0.1 831,718 - CA264_03570 0.85 -1.9 831,718 - CA264_03570 0.85 -0.3 831,729 + CA264_03570 0.86 +0.4 831,730 - CA264_03570 0.86 +0.2 831,740 + CA264_03570 0.87 -0.6 831,751 - CA264_03570 0.89 -0.8 831,770 + -0.0 831,771 - +0.8 831,867 + -0.7 831,869 + +0.6 831,869 + -0.2 831,869 + -0.4 831,927 + +0.1 832,006 + CA264_03575 0.18 +0.1 832,007 - CA264_03575 0.18 +0.2 832,007 - CA264_03575 0.18 +0.1 832,007 - CA264_03575 0.18 +0.2 832,008 + CA264_03575 0.18 -0.6 832,009 - CA264_03575 0.18 +0.2 832,009 - CA264_03575 0.18 -1.6 832,010 + CA264_03575 0.18 -0.4 832,047 + CA264_03575 0.23 -0.2 832,048 - CA264_03575 0.23 +0.4 832,064 - CA264_03575 0.24 -0.5 832,064 - CA264_03575 0.24 -0.1 832,065 + CA264_03575 0.24 +0.3 832,066 - CA264_03575 0.25 -0.3 832,212 - CA264_03575 0.41 +0.5 832,228 - CA264_03575 0.42 -0.7 832,241 + CA264_03575 0.44 +0.4 832,244 + CA264_03575 0.44 +0.5 832,263 - CA264_03575 0.46 -0.4 832,266 + CA264_03575 0.46 +1.1 832,267 - CA264_03575 0.47 -0.3 832,292 + CA264_03575 0.49 +1.0 832,292 + CA264_03575 0.49 -1.1 832,293 - CA264_03575 0.49 -0.3 832,293 - CA264_03575 0.49 -0.4 832,293 - CA264_03575 0.49 -0.6 832,293 - CA264_03575 0.49 +0.2 832,301 + CA264_03575 0.50 +0.4 832,301 + CA264_03575 0.50 +0.5 832,301 + CA264_03575 0.50 -0.2 832,301 + CA264_03575 0.50 +0.3 832,301 + CA264_03575 0.50 +0.1 832,301 + CA264_03575 0.50 -0.9 832,302 - CA264_03575 0.50 -0.2 832,302 - CA264_03575 0.50 +0.0 832,305 + CA264_03575 0.51 +0.6 832,305 + CA264_03575 0.51 +0.4 832,306 - CA264_03575 0.51 +1.0 832,365 - CA264_03575 0.57 -0.5 832,460 - CA264_03575 0.68 +0.2 832,460 - CA264_03575 0.68 +0.5 832,485 + CA264_03575 0.70 -0.7 832,503 + CA264_03575 0.72 -0.3 832,539 + CA264_03575 0.76 +0.3 832,539 + CA264_03575 0.76 -0.2 832,539 + CA264_03575 0.76 -1.0 832,582 - CA264_03575 0.81 -0.0 832,594 - CA264_03575 0.82 -0.1 832,653 - CA264_03575 0.89 -0.0 832,661 - CA264_03575 0.90 +0.9 832,661 - CA264_03575 0.90 +0.2 832,762 - +0.5 832,762 - -0.3 832,784 + +0.0 832,785 - +0.9 832,787 + -0.7 832,793 - -0.8 832,801 + -0.1 832,802 - -0.1 832,805 + +0.1 832,805 + -0.8 832,805 + -0.3 832,836 - -0.4 832,842 + +0.7 832,845 - +0.3 832,849 + -0.2 832,849 + -0.1
Or see this region's nucleotide sequence