Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02810

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02805 and CA264_02810 are separated by 481 nucleotidesCA264_02810 and CA264_02815 are separated by 87 nucleotides CA264_02805: CA264_02805 - peptidase M20, at 644,819 to 645,730 _02805 CA264_02810: CA264_02810 - thrombospondin type 3 repeat-containing protein, at 646,212 to 646,859 _02810 CA264_02815: CA264_02815 - ketoacyl reductase, at 646,947 to 647,966 _02815 Position (kb) 646 647Strain fitness (log2 ratio) -1 0 1at 645.239 kb on + strand, within CA264_02805at 645.245 kb on - strand, within CA264_02805at 645.358 kb on - strand, within CA264_02805at 645.358 kb on - strand, within CA264_02805at 645.380 kb on - strand, within CA264_02805at 645.410 kb on + strand, within CA264_02805at 645.410 kb on + strand, within CA264_02805at 645.608 kb on + strand, within CA264_02805at 645.609 kb on - strand, within CA264_02805at 645.717 kb on + strandat 645.728 kb on + strandat 645.729 kb on - strandat 645.729 kb on - strandat 645.729 kb on - strandat 645.731 kb on + strandat 645.848 kb on + strandat 645.990 kb on + strandat 645.991 kb on - strandat 645.992 kb on + strandat 645.993 kb on - strandat 645.998 kb on + strandat 645.999 kb on - strandat 645.999 kb on - strandat 645.999 kb on - strandat 646.034 kb on - strandat 646.038 kb on + strandat 646.109 kb on - strandat 646.124 kb on + strandat 646.125 kb on - strandat 646.126 kb on + strandat 646.126 kb on + strandat 646.126 kb on + strandat 646.127 kb on - strandat 646.127 kb on - strandat 646.161 kb on + strandat 646.162 kb on - strandat 646.235 kb on + strandat 646.256 kb on + strandat 646.297 kb on + strand, within CA264_02810at 646.315 kb on - strand, within CA264_02810at 646.356 kb on + strand, within CA264_02810at 646.486 kb on - strand, within CA264_02810at 646.519 kb on - strand, within CA264_02810at 646.545 kb on + strand, within CA264_02810at 646.548 kb on + strand, within CA264_02810at 646.548 kb on + strand, within CA264_02810at 646.549 kb on - strand, within CA264_02810at 646.602 kb on + strand, within CA264_02810at 646.603 kb on - strand, within CA264_02810at 646.621 kb on - strand, within CA264_02810at 646.708 kb on - strand, within CA264_02810at 646.708 kb on - strand, within CA264_02810at 646.857 kb on + strandat 646.862 kb on - strandat 646.862 kb on - strandat 646.862 kb on - strandat 646.864 kb on - strandat 646.896 kb on + strandat 646.896 kb on + strandat 646.913 kb on - strandat 646.927 kb on + strandat 646.958 kb on + strandat 646.958 kb on + strandat 646.967 kb on + strandat 646.968 kb on - strandat 647.060 kb on - strand, within CA264_02815at 647.098 kb on + strand, within CA264_02815at 647.153 kb on + strand, within CA264_02815at 647.154 kb on - strand, within CA264_02815at 647.202 kb on - strand, within CA264_02815at 647.227 kb on + strand, within CA264_02815at 647.246 kb on - strand, within CA264_02815at 647.380 kb on - strand, within CA264_02815at 647.392 kb on + strand, within CA264_02815at 647.392 kb on + strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.444 kb on + strand, within CA264_02815at 647.476 kb on + strand, within CA264_02815at 647.476 kb on + strand, within CA264_02815at 647.477 kb on - strand, within CA264_02815at 647.500 kb on - strand, within CA264_02815at 647.562 kb on + strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.609 kb on + strand, within CA264_02815at 647.653 kb on - strand, within CA264_02815at 647.723 kb on - strand, within CA264_02815at 647.815 kb on + strand, within CA264_02815at 647.816 kb on - strand, within CA264_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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645,239 + CA264_02805 0.46 -0.6
645,245 - CA264_02805 0.47 +0.1
645,358 - CA264_02805 0.59 +0.2
645,358 - CA264_02805 0.59 -0.3
645,380 - CA264_02805 0.62 -0.6
645,410 + CA264_02805 0.65 -0.1
645,410 + CA264_02805 0.65 +0.5
645,608 + CA264_02805 0.87 +0.2
645,609 - CA264_02805 0.87 -0.1
645,717 + -0.4
645,728 + -0.2
645,729 - -0.3
645,729 - +0.2
645,729 - +0.3
645,731 + -0.7
645,848 + -0.4
645,990 + -0.7
645,991 - +0.3
645,992 + +0.7
645,993 - -0.1
645,998 + +0.4
645,999 - -0.3
645,999 - +0.1
645,999 - -0.5
646,034 - -0.4
646,038 + +0.4
646,109 - +0.0
646,124 + -0.2
646,125 - +0.2
646,126 + -0.1
646,126 + -0.3
646,126 + -0.4
646,127 - +0.3
646,127 - -0.3
646,161 + +0.4
646,162 - -0.7
646,235 + +0.4
646,256 + +0.3
646,297 + CA264_02810 0.13 -1.2
646,315 - CA264_02810 0.16 +0.5
646,356 + CA264_02810 0.22 -0.1
646,486 - CA264_02810 0.42 -0.6
646,519 - CA264_02810 0.47 -0.4
646,545 + CA264_02810 0.51 -0.2
646,548 + CA264_02810 0.52 -0.4
646,548 + CA264_02810 0.52 -0.7
646,549 - CA264_02810 0.52 -0.2
646,602 + CA264_02810 0.60 +0.3
646,603 - CA264_02810 0.60 -0.7
646,621 - CA264_02810 0.63 -0.4
646,708 - CA264_02810 0.77 -1.2
646,708 - CA264_02810 0.77 -0.2
646,857 + +1.2
646,862 - -1.7
646,862 - +0.7
646,862 - +0.1
646,864 - +0.6
646,896 + -0.5
646,896 + -0.5
646,913 - -0.4
646,927 + -0.0
646,958 + +0.2
646,958 + -0.2
646,967 + +0.0
646,968 - -0.5
647,060 - CA264_02815 0.11 +0.1
647,098 + CA264_02815 0.15 -0.6
647,153 + CA264_02815 0.20 -1.3
647,154 - CA264_02815 0.20 +0.0
647,202 - CA264_02815 0.25 -0.1
647,227 + CA264_02815 0.27 +0.4
647,246 - CA264_02815 0.29 -0.2
647,380 - CA264_02815 0.42 -0.5
647,392 + CA264_02815 0.44 -0.5
647,392 + CA264_02815 0.44 +0.0
647,393 - CA264_02815 0.44 +0.1
647,393 - CA264_02815 0.44 +1.0
647,393 - CA264_02815 0.44 -0.6
647,444 + CA264_02815 0.49 -0.6
647,476 + CA264_02815 0.52 +0.0
647,476 + CA264_02815 0.52 +0.5
647,477 - CA264_02815 0.52 -0.5
647,500 - CA264_02815 0.54 -0.6
647,562 + CA264_02815 0.60 -0.2
647,563 - CA264_02815 0.60 -0.5
647,563 - CA264_02815 0.60 -0.4
647,563 - CA264_02815 0.60 +0.1
647,563 - CA264_02815 0.60 +0.3
647,565 - CA264_02815 0.61 -0.9
647,565 - CA264_02815 0.61 +0.1
647,565 - CA264_02815 0.61 +0.5
647,576 - CA264_02815 0.62 -0.2
647,576 - CA264_02815 0.62 -0.6
647,576 - CA264_02815 0.62 -0.8
647,609 + CA264_02815 0.65 -0.2
647,653 - CA264_02815 0.69 -0.3
647,723 - CA264_02815 0.76 -0.6
647,815 + CA264_02815 0.85 +0.1
647,816 - CA264_02815 0.85 -0.4

Or see this region's nucleotide sequence