Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01960 and CA264_01965 are separated by 306 nucleotides CA264_01965 and CA264_01970 are separated by 295 nucleotides CA264_01970 and CA264_01975 are separated by 82 nucleotides
CA264_01960: CA264_01960 - competence protein ComEC, at 453,399 to 455,510
_01960
CA264_01965: CA264_01965 - tRNA-Leu, at 455,817 to 455,898
_01965
CA264_01970: CA264_01970 - multidrug ABC transporter ATP-binding protein, at 456,194 to 456,952
_01970
CA264_01975: CA264_01975 - hypothetical protein, at 457,035 to 458,396
_01975
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.275 kb on + strand, within CA264_01960 at 455.376 kb on + strand at 455.376 kb on + strand at 455.377 kb on - strand at 455.377 kb on - strand at 455.377 kb on - strand at 455.378 kb on + strand at 455.379 kb on - strand at 455.466 kb on + strand at 455.469 kb on + strand at 455.469 kb on + strand at 455.469 kb on + strand at 455.470 kb on - strand at 455.547 kb on - strand at 455.730 kb on + strand at 455.753 kb on + strand at 455.753 kb on + strand at 455.753 kb on + strand at 455.754 kb on - strand at 455.939 kb on + strand at 455.939 kb on + strand at 455.940 kb on - strand at 455.970 kb on + strand at 455.971 kb on - strand at 455.971 kb on - strand at 455.982 kb on + strand at 455.982 kb on + strand at 456.010 kb on + strand at 456.017 kb on - strand at 456.074 kb on + strand at 456.113 kb on + strand at 456.124 kb on + strand at 456.126 kb on + strand at 456.150 kb on - strand at 456.150 kb on - strand at 456.201 kb on + strand at 456.202 kb on - strand at 456.208 kb on - strand at 456.597 kb on - strand, within CA264_01970 at 456.597 kb on - strand, within CA264_01970 at 456.779 kb on + strand, within CA264_01970 at 456.780 kb on - strand, within CA264_01970 at 456.780 kb on - strand, within CA264_01970 at 456.784 kb on - strand, within CA264_01970 at 456.834 kb on - strand, within CA264_01970 at 456.834 kb on - strand, within CA264_01970 at 457.024 kb on + strand at 457.024 kb on + strand at 457.028 kb on + strand at 457.033 kb on - strand at 457.033 kb on - strand at 457.079 kb on - strand at 457.143 kb on + strand at 457.143 kb on + strand at 457.144 kb on - strand at 457.204 kb on + strand, within CA264_01975 at 457.204 kb on + strand, within CA264_01975 at 457.205 kb on - strand, within CA264_01975 at 457.221 kb on + strand, within CA264_01975 at 457.222 kb on - strand, within CA264_01975 at 457.224 kb on - strand, within CA264_01975 at 457.236 kb on - strand, within CA264_01975 at 457.275 kb on + strand, within CA264_01975 at 457.275 kb on + strand, within CA264_01975 at 457.276 kb on - strand, within CA264_01975 at 457.276 kb on - strand, within CA264_01975 at 457.422 kb on + strand, within CA264_01975 at 457.475 kb on - strand, within CA264_01975 at 457.550 kb on + strand, within CA264_01975 at 457.595 kb on + strand, within CA264_01975 at 457.708 kb on + strand, within CA264_01975 at 457.709 kb on - strand, within CA264_01975 at 457.713 kb on + strand, within CA264_01975 at 457.714 kb on - strand, within CA264_01975 at 457.892 kb on - strand, within CA264_01975 at 457.914 kb on + strand, within CA264_01975 at 457.915 kb on - strand, within CA264_01975
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 455,275 + CA264_01960 0.89 -0.5 455,376 + +0.5 455,376 + -0.1 455,377 - -0.3 455,377 - +0.2 455,377 - +1.2 455,378 + -0.2 455,379 - +0.6 455,466 + -0.1 455,469 + +0.7 455,469 + -0.3 455,469 + +0.6 455,470 - -0.5 455,547 - +0.1 455,730 + -0.2 455,753 + -0.6 455,753 + +0.4 455,753 + -0.0 455,754 - +1.1 455,939 + -0.7 455,939 + -0.2 455,940 - -0.6 455,970 + +1.0 455,971 - -0.2 455,971 - -1.1 455,982 + -0.9 455,982 + -0.3 456,010 + +1.3 456,017 - -0.1 456,074 + -0.5 456,113 + +1.3 456,124 + -0.2 456,126 + +0.6 456,150 - -1.2 456,150 - +0.1 456,201 + -0.4 456,202 - -0.7 456,208 - +0.2 456,597 - CA264_01970 0.53 -1.7 456,597 - CA264_01970 0.53 +0.3 456,779 + CA264_01970 0.77 -1.8 456,780 - CA264_01970 0.77 +0.0 456,780 - CA264_01970 0.77 -1.1 456,784 - CA264_01970 0.78 +0.2 456,834 - CA264_01970 0.84 -1.9 456,834 - CA264_01970 0.84 -0.4 457,024 + +0.6 457,024 + -0.4 457,028 + +2.4 457,033 - +0.1 457,033 - +0.9 457,079 - -1.7 457,143 + -0.2 457,143 + -0.1 457,144 - -0.2 457,204 + CA264_01975 0.12 +0.3 457,204 + CA264_01975 0.12 +0.9 457,205 - CA264_01975 0.12 +0.9 457,221 + CA264_01975 0.14 -0.3 457,222 - CA264_01975 0.14 +0.3 457,224 - CA264_01975 0.14 -0.2 457,236 - CA264_01975 0.15 -0.6 457,275 + CA264_01975 0.18 +0.4 457,275 + CA264_01975 0.18 +0.2 457,276 - CA264_01975 0.18 -0.5 457,276 - CA264_01975 0.18 +0.3 457,422 + CA264_01975 0.28 -0.1 457,475 - CA264_01975 0.32 +0.2 457,550 + CA264_01975 0.38 +0.3 457,595 + CA264_01975 0.41 +0.3 457,708 + CA264_01975 0.49 +1.1 457,709 - CA264_01975 0.49 -0.0 457,713 + CA264_01975 0.50 +0.8 457,714 - CA264_01975 0.50 +0.1 457,892 - CA264_01975 0.63 +0.7 457,914 + CA264_01975 0.65 +0.2 457,915 - CA264_01975 0.65 +0.8
Or see this region's nucleotide sequence