Strain Fitness in Agrobacterium fabrum C58 around Atu6114

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6112 and Atu6113 are separated by 91 nucleotidesAtu6113 and Atu6114 are separated by 13 nucleotidesAtu6114 and Atu6115 are separated by 80 nucleotides Atu6112: Atu6112 - conserved hypothetical protein, at 133,562 to 134,212 Atu6112 Atu6113: Atu6113 - conserved hypothetical protein, at 134,304 to 134,882 Atu6113 Atu6114: Atu6114 - hypothetical protein, at 134,896 to 135,138 Atu6114 Atu6115: Atu6115 - conserved hypothetical protein, at 135,219 to 136,625 Atu6115 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 134.068 kb on - strand, within Atu6112at 134.124 kb on + strand, within Atu6112at 134.145 kb on - strand, within Atu6112at 134.154 kb on - strandat 134.215 kb on + strandat 134.223 kb on - strandat 134.223 kb on - strandat 134.246 kb on - strandat 134.348 kb on + strandat 134.362 kb on + strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.434 kb on + strand, within Atu6113at 134.442 kb on - strand, within Atu6113at 134.515 kb on + strand, within Atu6113at 134.566 kb on - strand, within Atu6113at 134.566 kb on - strand, within Atu6113at 134.576 kb on - strand, within Atu6113at 134.751 kb on + strand, within Atu6113at 134.754 kb on - strand, within Atu6113at 134.847 kb on + strandat 134.852 kb on + strandat 134.983 kb on + strand, within Atu6114at 135.030 kb on - strand, within Atu6114at 135.093 kb on + strand, within Atu6114at 135.165 kb on - strandat 135.171 kb on + strandat 135.171 kb on + strandat 135.179 kb on - strandat 135.179 kb on - strandat 135.185 kb on + strandat 135.237 kb on - strandat 135.274 kb on + strandat 135.283 kb on + strandat 135.359 kb on - strandat 135.361 kb on + strand, within Atu6115at 135.489 kb on - strand, within Atu6115at 135.559 kb on - strand, within Atu6115at 135.670 kb on + strand, within Atu6115at 135.670 kb on + strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.729 kb on - strand, within Atu6115at 135.732 kb on + strand, within Atu6115at 135.740 kb on + strand, within Atu6115at 135.786 kb on + strand, within Atu6115at 135.818 kb on - strand, within Atu6115at 135.836 kb on - strand, within Atu6115at 135.931 kb on + strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.106 kb on - strand, within Atu6115

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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134,068 - Atu6112 0.78 -0.4
134,124 + Atu6112 0.86 -0.9
134,145 - Atu6112 0.90 -1.3
134,154 - +0.4
134,215 + -0.1
134,223 - +1.8
134,223 - +0.2
134,246 - -0.1
134,348 + +0.5
134,362 + Atu6113 0.10 +1.0
134,365 - Atu6113 0.11 +0.8
134,365 - Atu6113 0.11 -0.6
134,365 - Atu6113 0.11 -0.5
134,434 + Atu6113 0.22 +1.1
134,442 - Atu6113 0.24 +0.0
134,515 + Atu6113 0.36 -0.6
134,566 - Atu6113 0.45 +0.5
134,566 - Atu6113 0.45 +0.5
134,576 - Atu6113 0.47 -0.1
134,751 + Atu6113 0.77 -0.2
134,754 - Atu6113 0.78 +0.5
134,847 + +0.2
134,852 + +1.3
134,983 + Atu6114 0.36 -1.9
135,030 - Atu6114 0.55 -1.9
135,093 + Atu6114 0.81 -1.6
135,165 - +0.2
135,171 + +0.7
135,171 + -0.0
135,179 - -2.2
135,179 - -0.1
135,185 + -1.4
135,237 - -0.1
135,274 + +0.6
135,283 + +0.3
135,359 - -0.5
135,361 + Atu6115 0.10 +1.4
135,489 - Atu6115 0.19 +0.4
135,559 - Atu6115 0.24 +0.5
135,670 + Atu6115 0.32 -0.0
135,670 + Atu6115 0.32 +0.1
135,678 - Atu6115 0.33 -0.0
135,678 - Atu6115 0.33 -0.2
135,678 - Atu6115 0.33 +0.4
135,678 - Atu6115 0.33 -0.8
135,729 - Atu6115 0.36 -0.6
135,732 + Atu6115 0.36 -0.1
135,740 + Atu6115 0.37 +0.1
135,786 + Atu6115 0.40 -1.7
135,818 - Atu6115 0.43 -0.1
135,836 - Atu6115 0.44 +0.4
135,931 + Atu6115 0.51 -0.2
135,974 - Atu6115 0.54 -0.0
135,974 - Atu6115 0.54 +2.1
136,053 - Atu6115 0.59 -0.4
136,053 - Atu6115 0.59 +0.5
136,091 + Atu6115 0.62 -1.4
136,091 + Atu6115 0.62 -0.5
136,091 + Atu6115 0.62 +1.8
136,099 - Atu6115 0.63 +0.2
136,099 - Atu6115 0.63 -0.7
136,099 - Atu6115 0.63 -0.4
136,106 - Atu6115 0.63 +1.8

Or see this region's nucleotide sequence