Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3477 and Atu3478 are separated by 8 nucleotides Atu3478 and Atu3479 are separated by 7 nucleotides
Atu3477: Atu3477 - acyl-CoA dehydrogenase, at 524,524 to 525,696
Atu3477
Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306
Atu3478
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -1
0
1 at 524.710 kb on - strand, within Atu3477 at 524.721 kb on + strand, within Atu3477 at 524.739 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.981 kb on - strand, within Atu3477 at 524.987 kb on - strand, within Atu3477 at 525.069 kb on - strand, within Atu3477 at 525.112 kb on + strand, within Atu3477 at 525.133 kb on + strand, within Atu3477 at 525.173 kb on + strand, within Atu3477 at 525.181 kb on - strand, within Atu3477 at 525.441 kb on + strand, within Atu3477 at 525.456 kb on - strand, within Atu3477 at 525.466 kb on + strand, within Atu3477 at 525.487 kb on - strand, within Atu3477 at 525.676 kb on - strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.685 kb on + strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.692 kb on + strand at 525.771 kb on + strand at 526.053 kb on - strand, within Atu3478 at 526.085 kb on + strand, within Atu3478 at 526.146 kb on - strand, within Atu3478 at 526.233 kb on + strand, within Atu3478 at 526.258 kb on + strand, within Atu3478 at 526.352 kb on + strand, within Atu3478 at 526.379 kb on - strand, within Atu3478 at 526.389 kb on + strand, within Atu3478 at 526.474 kb on - strand, within Atu3478 at 526.509 kb on - strand, within Atu3478 at 526.565 kb on + strand, within Atu3478 at 526.570 kb on + strand, within Atu3478 at 526.622 kb on - strand, within Atu3478 at 526.632 kb on - strand, within Atu3478 at 526.682 kb on - strand, within Atu3478 at 526.890 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 527.045 kb on + strand, within Atu3478 at 527.104 kb on + strand, within Atu3478 at 527.232 kb on + strand at 527.240 kb on - strand at 527.265 kb on - strand at 527.389 kb on - strand at 527.439 kb on + strand at 527.443 kb on - strand at 527.534 kb on + strand, within Atu3479 at 527.614 kb on + strand, within Atu3479 at 527.796 kb on - strand, within Atu3479 at 528.004 kb on + strand, within Atu3479 at 528.052 kb on - strand, within Atu3479 at 528.083 kb on - strand, within Atu3479 at 528.131 kb on + strand, within Atu3479 at 528.192 kb on + strand, within Atu3479 at 528.273 kb on + strand, within Atu3479 at 528.287 kb on - strand, within Atu3479
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 524,710 - Atu3477 0.16 +0.5 524,721 + Atu3477 0.17 -0.5 524,739 + Atu3477 0.18 -0.2 524,823 + Atu3477 0.25 -0.2 524,823 + Atu3477 0.25 +0.3 524,831 - Atu3477 0.26 +0.4 524,831 - Atu3477 0.26 -0.0 524,973 + Atu3477 0.38 +0.0 524,973 + Atu3477 0.38 +0.7 524,981 - Atu3477 0.39 +0.3 524,987 - Atu3477 0.39 +0.9 525,069 - Atu3477 0.46 -0.1 525,112 + Atu3477 0.50 -0.7 525,133 + Atu3477 0.52 -0.1 525,173 + Atu3477 0.55 +0.3 525,181 - Atu3477 0.56 +0.4 525,441 + Atu3477 0.78 +0.1 525,456 - Atu3477 0.79 -0.2 525,466 + Atu3477 0.80 +0.5 525,487 - Atu3477 0.82 +0.3 525,676 - -0.1 525,678 + -0.3 525,678 + -0.1 525,678 + -0.1 525,685 + -1.3 525,686 - +0.3 525,686 - +0.5 525,686 - -0.0 525,686 - -0.1 525,692 + +0.4 525,771 + -0.1 526,053 - Atu3478 0.22 +1.5 526,085 + Atu3478 0.24 +0.2 526,146 - Atu3478 0.28 +1.0 526,233 + Atu3478 0.33 -0.7 526,258 + Atu3478 0.35 -0.4 526,352 + Atu3478 0.40 +0.0 526,379 - Atu3478 0.42 +0.5 526,389 + Atu3478 0.43 +0.2 526,474 - Atu3478 0.48 -0.1 526,509 - Atu3478 0.50 -0.0 526,565 + Atu3478 0.54 +0.4 526,570 + Atu3478 0.54 -0.3 526,622 - Atu3478 0.57 -0.8 526,632 - Atu3478 0.58 -0.0 526,682 - Atu3478 0.61 -0.2 526,890 + Atu3478 0.74 -0.8 526,979 + Atu3478 0.80 -0.2 526,979 + Atu3478 0.80 -0.5 526,979 + Atu3478 0.80 -1.0 527,045 + Atu3478 0.84 -1.0 527,104 + Atu3478 0.87 +0.1 527,232 + +0.1 527,240 - +0.2 527,265 - -0.1 527,389 - -0.2 527,439 + -0.0 527,443 - +0.4 527,534 + Atu3479 0.11 -0.3 527,614 + Atu3479 0.15 +0.2 527,796 - Atu3479 0.24 -1.0 528,004 + Atu3479 0.35 -0.1 528,052 - Atu3479 0.37 -0.1 528,083 - Atu3479 0.39 +0.3 528,131 + Atu3479 0.41 +0.3 528,192 + Atu3479 0.44 +0.1 528,273 + Atu3479 0.48 -0.3 528,287 - Atu3479 0.49 +1.5
Or see this region's nucleotide sequence