Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21345 and AMB_RS23650 are separated by 9 nucleotides AMB_RS23650 and AMB_RS21355 are separated by 102 nucleotides AMB_RS21355 and AMB_RS21360 are separated by 68 nucleotides
AMB_RS21345: AMB_RS21345 - DUF1501 domain-containing protein, at 4,631,584 to 4,632,756
_RS21345
AMB_RS23650: AMB_RS23650 - hypothetical protein, at 4,632,766 to 4,633,629
_RS23650
AMB_RS21355: AMB_RS21355 - GTP cyclohydrolase I FolE, at 4,633,732 to 4,634,391
_RS21355
AMB_RS21360: AMB_RS21360 - Co2+/Mg2+ efflux protein ApaG, at 4,634,460 to 4,634,852
_RS21360
Position (kb) 4632
4633
4634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4632.133 kb on + strand, within AMB_RS21345 at 4632.348 kb on + strand, within AMB_RS21345 at 4632.848 kb on + strand at 4632.848 kb on + strand at 4632.848 kb on + strand at 4632.848 kb on + strand at 4632.848 kb on + strand at 4632.848 kb on + strand at 4632.849 kb on - strand at 4632.849 kb on - strand at 4632.849 kb on - strand at 4632.900 kb on - strand, within AMB_RS23650 at 4632.920 kb on + strand, within AMB_RS23650 at 4632.920 kb on + strand, within AMB_RS23650 at 4632.920 kb on + strand, within AMB_RS23650 at 4632.920 kb on + strand, within AMB_RS23650 at 4632.920 kb on + strand, within AMB_RS23650 at 4632.921 kb on - strand, within AMB_RS23650 at 4633.259 kb on - strand, within AMB_RS23650 at 4633.259 kb on - strand, within AMB_RS23650 at 4633.259 kb on - strand, within AMB_RS23650 at 4633.259 kb on - strand, within AMB_RS23650 at 4633.358 kb on + strand, within AMB_RS23650 at 4633.359 kb on - strand, within AMB_RS23650 at 4633.359 kb on - strand, within AMB_RS23650 at 4633.663 kb on + strand at 4633.772 kb on - strand at 4633.772 kb on - strand at 4634.450 kb on - strand at 4634.462 kb on - strand at 4634.551 kb on + strand, within AMB_RS21360 at 4634.551 kb on + strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.608 kb on + strand, within AMB_RS21360 at 4634.608 kb on + strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 4,632,133 + AMB_RS21345 0.47 +0.2 4,632,348 + AMB_RS21345 0.65 -0.2 4,632,848 + -1.7 4,632,848 + -0.8 4,632,848 + +1.6 4,632,848 + -2.8 4,632,848 + -0.8 4,632,848 + -3.3 4,632,849 - -1.3 4,632,849 - -0.0 4,632,849 - -1.0 4,632,900 - AMB_RS23650 0.16 +0.7 4,632,920 + AMB_RS23650 0.18 -0.1 4,632,920 + AMB_RS23650 0.18 +0.2 4,632,920 + AMB_RS23650 0.18 -1.3 4,632,920 + AMB_RS23650 0.18 -0.2 4,632,920 + AMB_RS23650 0.18 +0.1 4,632,921 - AMB_RS23650 0.18 +0.1 4,633,259 - AMB_RS23650 0.57 -0.5 4,633,259 - AMB_RS23650 0.57 +0.3 4,633,259 - AMB_RS23650 0.57 +0.2 4,633,259 - AMB_RS23650 0.57 +1.9 4,633,358 + AMB_RS23650 0.69 +0.3 4,633,359 - AMB_RS23650 0.69 -1.7 4,633,359 - AMB_RS23650 0.69 -1.1 4,633,663 + +0.1 4,633,772 - +1.0 4,633,772 - +0.1 4,634,450 - -0.9 4,634,462 - -0.8 4,634,551 + AMB_RS21360 0.23 -0.2 4,634,551 + AMB_RS21360 0.23 -1.0 4,634,552 - AMB_RS21360 0.23 -0.8 4,634,552 - AMB_RS21360 0.23 +0.3 4,634,552 - AMB_RS21360 0.23 +0.2 4,634,600 + AMB_RS21360 0.36 -0.4 4,634,600 + AMB_RS21360 0.36 -0.7 4,634,600 + AMB_RS21360 0.36 -1.2 4,634,600 + AMB_RS21360 0.36 -1.0 4,634,600 + AMB_RS21360 0.36 -0.8 4,634,601 - AMB_RS21360 0.36 +0.3 4,634,601 - AMB_RS21360 0.36 +1.5 4,634,601 - AMB_RS21360 0.36 -2.6 4,634,601 - AMB_RS21360 0.36 +0.3 4,634,601 - AMB_RS21360 0.36 -1.6 4,634,602 + AMB_RS21360 0.36 +0.6 4,634,602 + AMB_RS21360 0.36 -1.0 4,634,602 + AMB_RS21360 0.36 -1.4 4,634,602 + AMB_RS21360 0.36 -0.2 4,634,602 + AMB_RS21360 0.36 +0.0 4,634,602 + AMB_RS21360 0.36 -0.3 4,634,602 + AMB_RS21360 0.36 -2.8 4,634,603 - AMB_RS21360 0.36 -1.0 4,634,603 - AMB_RS21360 0.36 +1.3 4,634,603 - AMB_RS21360 0.36 -2.7 4,634,603 - AMB_RS21360 0.36 -0.6 4,634,603 - AMB_RS21360 0.36 -0.2 4,634,603 - AMB_RS21360 0.36 -0.6 4,634,608 + AMB_RS21360 0.38 -2.8 4,634,608 + AMB_RS21360 0.38 +0.6 4,634,609 - AMB_RS21360 0.38 -0.1 4,634,609 - AMB_RS21360 0.38 -0.4 4,634,609 - AMB_RS21360 0.38 -0.2
Or see this region's nucleotide sequence