Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23590

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18520 and AMB_RS18525 are separated by 17 nucleotidesAMB_RS18525 and AMB_RS18530 are separated by 17 nucleotidesAMB_RS18530 and AMB_RS23590 are separated by 112 nucleotidesAMB_RS23590 and AMB_RS18540 are separated by 146 nucleotidesAMB_RS18540 and AMB_RS18545 overlap by 4 nucleotides AMB_RS18520: AMB_RS18520 - B12-binding domain-containing radical SAM protein, at 4,022,680 to 4,024,194 _RS18520 AMB_RS18525: AMB_RS18525 - hypothetical protein, at 4,024,212 to 4,024,469 _RS18525 AMB_RS18530: AMB_RS18530 - hypothetical protein, at 4,024,487 to 4,024,915 _RS18530 AMB_RS23590: AMB_RS23590 - hypothetical protein, at 4,025,028 to 4,025,549 _RS23590 AMB_RS18540: AMB_RS18540 - DNA-binding response regulator, at 4,025,696 to 4,026,340 _RS18540 AMB_RS18545: AMB_RS18545 - PAS domain S-box protein, at 4,026,337 to 4,028,148 _RS18545 Position (kb) 4025 4026Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4024.180 kb on + strandat 4024.181 kb on - strandat 4024.213 kb on + strandat 4024.245 kb on + strand, within AMB_RS18525at 4024.245 kb on + strand, within AMB_RS18525at 4024.245 kb on + strand, within AMB_RS18525at 4024.245 kb on + strand, within AMB_RS18525at 4024.321 kb on + strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.322 kb on - strand, within AMB_RS18525at 4024.355 kb on + strand, within AMB_RS18525at 4024.356 kb on - strand, within AMB_RS18525at 4024.356 kb on - strand, within AMB_RS18525at 4024.356 kb on - strand, within AMB_RS18525at 4024.356 kb on - strand, within AMB_RS18525at 4024.430 kb on + strand, within AMB_RS18525at 4024.488 kb on + strandat 4024.488 kb on + strandat 4024.488 kb on + strandat 4024.488 kb on + strandat 4024.489 kb on - strandat 4024.489 kb on - strandat 4024.489 kb on - strandat 4024.489 kb on - strandat 4024.523 kb on + strandat 4024.585 kb on + strand, within AMB_RS18530at 4024.586 kb on - strand, within AMB_RS18530at 4024.586 kb on - strand, within AMB_RS18530at 4024.737 kb on + strand, within AMB_RS18530at 4024.738 kb on - strand, within AMB_RS18530at 4024.738 kb on - strand, within AMB_RS18530at 4024.738 kb on - strand, within AMB_RS18530at 4024.804 kb on + strand, within AMB_RS18530at 4024.804 kb on + strand, within AMB_RS18530at 4024.804 kb on + strand, within AMB_RS18530at 4024.804 kb on + strand, within AMB_RS18530at 4024.804 kb on + strand, within AMB_RS18530at 4024.805 kb on - strand, within AMB_RS18530at 4024.805 kb on - strand, within AMB_RS18530at 4024.805 kb on - strand, within AMB_RS18530at 4024.805 kb on - strand, within AMB_RS18530at 4024.805 kb on - strand, within AMB_RS18530at 4025.021 kb on + strandat 4025.021 kb on + strandat 4025.022 kb on - strandat 4025.022 kb on - strandat 4025.057 kb on + strandat 4025.057 kb on + strandat 4025.057 kb on + strandat 4025.129 kb on + strand, within AMB_RS23590at 4025.130 kb on - strand, within AMB_RS23590at 4025.130 kb on - strand, within AMB_RS23590at 4025.130 kb on - strand, within AMB_RS23590at 4025.146 kb on + strand, within AMB_RS23590at 4025.146 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.148 kb on + strand, within AMB_RS23590at 4025.149 kb on - strand, within AMB_RS23590at 4025.149 kb on - strand, within AMB_RS23590at 4025.149 kb on - strand, within AMB_RS23590at 4025.149 kb on - strand, within AMB_RS23590at 4025.149 kb on - strand, within AMB_RS23590at 4025.220 kb on - strand, within AMB_RS23590at 4025.550 kb on + strandat 4025.551 kb on - strandat 4025.551 kb on - strandat 4025.551 kb on - strandat 4025.579 kb on + strandat 4025.641 kb on - strandat 4025.641 kb on - strandat 4025.655 kb on + strandat 4025.669 kb on + strandat 4025.669 kb on + strandat 4025.670 kb on - strandat 4025.689 kb on + strandat 4025.727 kb on + strandat 4025.727 kb on + strandat 4025.773 kb on + strand, within AMB_RS18540at 4025.773 kb on + strand, within AMB_RS18540at 4025.774 kb on - strand, within AMB_RS18540at 4025.774 kb on - strand, within AMB_RS18540at 4025.774 kb on - strand, within AMB_RS18540at 4025.856 kb on - strand, within AMB_RS18540at 4025.856 kb on - strand, within AMB_RS18540at 4025.856 kb on - strand, within AMB_RS18540at 4026.029 kb on - strand, within AMB_RS18540at 4026.029 kb on - strand, within AMB_RS18540at 4026.029 kb on - strand, within AMB_RS18540at 4026.029 kb on - strand, within AMB_RS18540at 4026.029 kb on - strand, within AMB_RS18540at 4026.036 kb on + strand, within AMB_RS18540at 4026.036 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.072 kb on + strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.073 kb on - strand, within AMB_RS18540at 4026.107 kb on - strand, within AMB_RS18540at 4026.136 kb on + strand, within AMB_RS18540at 4026.137 kb on - strand, within AMB_RS18540at 4026.224 kb on - strand, within AMB_RS18540at 4026.371 kb on + strandat 4026.371 kb on + strandat 4026.450 kb on + strandat 4026.450 kb on + strandat 4026.450 kb on + strandat 4026.451 kb on - strandat 4026.451 kb on - strandat 4026.547 kb on - strand, within AMB_RS18545

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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4,024,180 + +1.0
4,024,181 - -1.0
4,024,213 + +1.5
4,024,245 + AMB_RS18525 0.13 +0.1
4,024,245 + AMB_RS18525 0.13 -1.2
4,024,245 + AMB_RS18525 0.13 -0.2
4,024,245 + AMB_RS18525 0.13 +0.2
4,024,321 + AMB_RS18525 0.42 -0.5
4,024,322 - AMB_RS18525 0.43 -1.1
4,024,322 - AMB_RS18525 0.43 -0.4
4,024,322 - AMB_RS18525 0.43 +1.1
4,024,322 - AMB_RS18525 0.43 -1.0
4,024,322 - AMB_RS18525 0.43 +0.1
4,024,322 - AMB_RS18525 0.43 -0.2
4,024,322 - AMB_RS18525 0.43 -0.2
4,024,355 + AMB_RS18525 0.55 +0.1
4,024,356 - AMB_RS18525 0.56 -0.6
4,024,356 - AMB_RS18525 0.56 -0.1
4,024,356 - AMB_RS18525 0.56 -2.7
4,024,356 - AMB_RS18525 0.56 -0.6
4,024,430 + AMB_RS18525 0.84 -2.0
4,024,488 + +0.4
4,024,488 + -0.4
4,024,488 + -1.2
4,024,488 + -0.5
4,024,489 - -0.9
4,024,489 - -2.3
4,024,489 - +2.3
4,024,489 - +0.4
4,024,523 + +0.4
4,024,585 + AMB_RS18530 0.23 +0.6
4,024,586 - AMB_RS18530 0.23 -0.3
4,024,586 - AMB_RS18530 0.23 -0.6
4,024,737 + AMB_RS18530 0.58 -0.3
4,024,738 - AMB_RS18530 0.59 +2.4
4,024,738 - AMB_RS18530 0.59 -0.7
4,024,738 - AMB_RS18530 0.59 -0.4
4,024,804 + AMB_RS18530 0.74 -0.8
4,024,804 + AMB_RS18530 0.74 -3.1
4,024,804 + AMB_RS18530 0.74 -0.6
4,024,804 + AMB_RS18530 0.74 -0.1
4,024,804 + AMB_RS18530 0.74 -0.2
4,024,805 - AMB_RS18530 0.74 -0.7
4,024,805 - AMB_RS18530 0.74 -0.1
4,024,805 - AMB_RS18530 0.74 -1.4
4,024,805 - AMB_RS18530 0.74 +2.6
4,024,805 - AMB_RS18530 0.74 -0.5
4,025,021 + -0.6
4,025,021 + +0.0
4,025,022 - -2.0
4,025,022 - -0.0
4,025,057 + -0.3
4,025,057 + -2.8
4,025,057 + -1.0
4,025,129 + AMB_RS23590 0.19 +0.2
4,025,130 - AMB_RS23590 0.20 -0.1
4,025,130 - AMB_RS23590 0.20 -0.5
4,025,130 - AMB_RS23590 0.20 +0.1
4,025,146 + AMB_RS23590 0.23 +0.8
4,025,146 + AMB_RS23590 0.23 -1.6
4,025,148 + AMB_RS23590 0.23 -0.8
4,025,148 + AMB_RS23590 0.23 +0.6
4,025,148 + AMB_RS23590 0.23 -0.2
4,025,148 + AMB_RS23590 0.23 +1.1
4,025,148 + AMB_RS23590 0.23 +0.7
4,025,148 + AMB_RS23590 0.23 -1.7
4,025,148 + AMB_RS23590 0.23 -0.1
4,025,149 - AMB_RS23590 0.23 -1.3
4,025,149 - AMB_RS23590 0.23 -0.5
4,025,149 - AMB_RS23590 0.23 -0.3
4,025,149 - AMB_RS23590 0.23 -1.4
4,025,149 - AMB_RS23590 0.23 -2.5
4,025,220 - AMB_RS23590 0.37 -0.4
4,025,550 + -0.6
4,025,551 - -0.3
4,025,551 - -0.2
4,025,551 - -1.7
4,025,579 + -0.4
4,025,641 - -0.4
4,025,641 - +1.3
4,025,655 + +0.1
4,025,669 + +0.5
4,025,669 + +0.7
4,025,670 - +2.2
4,025,689 + +1.1
4,025,727 + +0.6
4,025,727 + +0.4
4,025,773 + AMB_RS18540 0.12 -1.4
4,025,773 + AMB_RS18540 0.12 -1.6
4,025,774 - AMB_RS18540 0.12 +2.3
4,025,774 - AMB_RS18540 0.12 -0.6
4,025,774 - AMB_RS18540 0.12 -1.1
4,025,856 - AMB_RS18540 0.25 -0.6
4,025,856 - AMB_RS18540 0.25 -0.3
4,025,856 - AMB_RS18540 0.25 +0.2
4,026,029 - AMB_RS18540 0.52 +0.8
4,026,029 - AMB_RS18540 0.52 -0.3
4,026,029 - AMB_RS18540 0.52 -2.6
4,026,029 - AMB_RS18540 0.52 +0.3
4,026,029 - AMB_RS18540 0.52 -0.4
4,026,036 + AMB_RS18540 0.53 -1.5
4,026,036 + AMB_RS18540 0.53 -0.2
4,026,072 + AMB_RS18540 0.58 -0.4
4,026,072 + AMB_RS18540 0.58 +0.5
4,026,072 + AMB_RS18540 0.58 -2.6
4,026,072 + AMB_RS18540 0.58 -2.9
4,026,072 + AMB_RS18540 0.58 +0.7
4,026,072 + AMB_RS18540 0.58 -1.0
4,026,072 + AMB_RS18540 0.58 +0.3
4,026,072 + AMB_RS18540 0.58 +0.6
4,026,072 + AMB_RS18540 0.58 +0.4
4,026,072 + AMB_RS18540 0.58 -1.0
4,026,072 + AMB_RS18540 0.58 +2.2
4,026,072 + AMB_RS18540 0.58 -0.6
4,026,072 + AMB_RS18540 0.58 -1.6
4,026,073 - AMB_RS18540 0.58 -0.7
4,026,073 - AMB_RS18540 0.58 -0.6
4,026,073 - AMB_RS18540 0.58 +1.7
4,026,073 - AMB_RS18540 0.58 +0.1
4,026,073 - AMB_RS18540 0.58 -0.5
4,026,073 - AMB_RS18540 0.58 -0.5
4,026,073 - AMB_RS18540 0.58 -2.2
4,026,073 - AMB_RS18540 0.58 -2.0
4,026,107 - AMB_RS18540 0.64 +0.1
4,026,136 + AMB_RS18540 0.68 +0.0
4,026,137 - AMB_RS18540 0.68 -2.6
4,026,224 - AMB_RS18540 0.82 +1.0
4,026,371 + +1.4
4,026,371 + +3.1
4,026,450 + +0.1
4,026,450 + -0.4
4,026,450 + +0.2
4,026,451 - -0.1
4,026,451 - +1.1
4,026,547 - AMB_RS18545 0.12 -0.2

Or see this region's nucleotide sequence