Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21110

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21100 and AMB_RS21105 overlap by 58 nucleotidesAMB_RS21105 and AMB_RS21110 overlap by 4 nucleotidesAMB_RS21110 and AMB_RS21115 are separated by 72 nucleotidesAMB_RS21115 and AMB_RS21120 are separated by 6 nucleotides AMB_RS21100: AMB_RS21100 - histidinol-phosphatase, at 4,585,103 to 4,585,879 _RS21100 AMB_RS21105: AMB_RS21105 - endonuclease III, at 4,585,822 to 4,586,511 _RS21105 AMB_RS21110: AMB_RS21110 - hemerythrin, at 4,586,508 to 4,586,924 _RS21110 AMB_RS21115: AMB_RS21115 - membrane-bound metal-dependent hydrolase, at 4,586,997 to 4,587,491 _RS21115 AMB_RS21120: AMB_RS21120 - DUF4337 domain-containing protein, at 4,587,498 to 4,588,103 _RS21120 Position (kb) 4586 4587Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4585.903 kb on + strand, within AMB_RS21105at 4585.903 kb on + strand, within AMB_RS21105at 4585.903 kb on + strand, within AMB_RS21105at 4585.903 kb on + strand, within AMB_RS21105at 4585.904 kb on - strand, within AMB_RS21105at 4585.951 kb on + strand, within AMB_RS21105at 4585.952 kb on - strand, within AMB_RS21105at 4585.963 kb on + strand, within AMB_RS21105at 4585.964 kb on - strand, within AMB_RS21105at 4585.964 kb on - strand, within AMB_RS21105at 4586.120 kb on - strand, within AMB_RS21105at 4586.120 kb on - strand, within AMB_RS21105at 4586.120 kb on - strand, within AMB_RS21105at 4586.120 kb on - strand, within AMB_RS21105at 4586.186 kb on + strand, within AMB_RS21105at 4586.186 kb on + strand, within AMB_RS21105at 4586.186 kb on + strand, within AMB_RS21105at 4586.187 kb on - strand, within AMB_RS21105at 4586.187 kb on - strand, within AMB_RS21105at 4586.187 kb on - strand, within AMB_RS21105at 4586.187 kb on - strand, within AMB_RS21105at 4586.428 kb on + strand, within AMB_RS21105at 4586.429 kb on - strand, within AMB_RS21105at 4586.430 kb on + strand, within AMB_RS21105at 4586.430 kb on + strand, within AMB_RS21105at 4586.431 kb on - strand, within AMB_RS21105at 4586.431 kb on - strand, within AMB_RS21105at 4586.519 kb on - strandat 4586.533 kb on + strandat 4586.534 kb on - strandat 4586.534 kb on - strandat 4587.007 kb on + strandat 4587.008 kb on - strandat 4587.008 kb on - strandat 4587.008 kb on - strandat 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.124 kb on + strand, within AMB_RS21115at 4587.125 kb on - strand, within AMB_RS21115at 4587.125 kb on - strand, within AMB_RS21115at 4587.125 kb on - strand, within AMB_RS21115at 4587.125 kb on - strand, within AMB_RS21115at 4587.125 kb on - strand, within AMB_RS21115at 4587.306 kb on + strand, within AMB_RS21115at 4587.307 kb on - strand, within AMB_RS21115at 4587.307 kb on - strand, within AMB_RS21115at 4587.307 kb on - strand, within AMB_RS21115at 4587.307 kb on - strand, within AMB_RS21115at 4587.500 kb on - strandat 4587.500 kb on - strandat 4587.509 kb on + strandat 4587.510 kb on - strandat 4587.653 kb on - strand, within AMB_RS21120at 4587.667 kb on + strand, within AMB_RS21120at 4587.667 kb on + strand, within AMB_RS21120at 4587.668 kb on - strand, within AMB_RS21120at 4587.870 kb on - strand, within AMB_RS21120at 4587.883 kb on + strand, within AMB_RS21120at 4587.883 kb on + strand, within AMB_RS21120at 4587.883 kb on + strand, within AMB_RS21120at 4587.884 kb on - strand, within AMB_RS21120at 4587.884 kb on - strand, within AMB_RS21120

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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4,585,903 + AMB_RS21105 0.12 -0.0
4,585,903 + AMB_RS21105 0.12 -0.1
4,585,903 + AMB_RS21105 0.12 -0.1
4,585,903 + AMB_RS21105 0.12 -0.4
4,585,904 - AMB_RS21105 0.12 -0.4
4,585,951 + AMB_RS21105 0.19 +1.0
4,585,952 - AMB_RS21105 0.19 -0.4
4,585,963 + AMB_RS21105 0.20 -0.1
4,585,964 - AMB_RS21105 0.21 +0.5
4,585,964 - AMB_RS21105 0.21 +1.4
4,586,120 - AMB_RS21105 0.43 -0.0
4,586,120 - AMB_RS21105 0.43 +0.8
4,586,120 - AMB_RS21105 0.43 +0.6
4,586,120 - AMB_RS21105 0.43 +0.0
4,586,186 + AMB_RS21105 0.53 +0.6
4,586,186 + AMB_RS21105 0.53 +0.7
4,586,186 + AMB_RS21105 0.53 +1.2
4,586,187 - AMB_RS21105 0.53 +0.0
4,586,187 - AMB_RS21105 0.53 -0.5
4,586,187 - AMB_RS21105 0.53 +0.3
4,586,187 - AMB_RS21105 0.53 -0.4
4,586,428 + AMB_RS21105 0.88 -0.6
4,586,429 - AMB_RS21105 0.88 +0.3
4,586,430 + AMB_RS21105 0.88 -0.3
4,586,430 + AMB_RS21105 0.88 +1.0
4,586,431 - AMB_RS21105 0.88 +2.2
4,586,431 - AMB_RS21105 0.88 +1.9
4,586,519 - +0.8
4,586,533 + -0.6
4,586,534 - -1.4
4,586,534 - +0.6
4,587,007 + +0.2
4,587,008 - +1.6
4,587,008 - -0.6
4,587,008 - -1.9
4,587,124 + AMB_RS21115 0.26 +0.3
4,587,124 + AMB_RS21115 0.26 -0.3
4,587,124 + AMB_RS21115 0.26 +0.8
4,587,124 + AMB_RS21115 0.26 +3.2
4,587,124 + AMB_RS21115 0.26 +0.2
4,587,124 + AMB_RS21115 0.26 +1.3
4,587,124 + AMB_RS21115 0.26 +0.6
4,587,124 + AMB_RS21115 0.26 -0.8
4,587,125 - AMB_RS21115 0.26 -1.2
4,587,125 - AMB_RS21115 0.26 +0.3
4,587,125 - AMB_RS21115 0.26 +0.4
4,587,125 - AMB_RS21115 0.26 -1.0
4,587,125 - AMB_RS21115 0.26 +0.2
4,587,306 + AMB_RS21115 0.62 +0.5
4,587,307 - AMB_RS21115 0.63 -0.4
4,587,307 - AMB_RS21115 0.63 -0.5
4,587,307 - AMB_RS21115 0.63 +0.6
4,587,307 - AMB_RS21115 0.63 +0.0
4,587,500 - -1.7
4,587,500 - -0.2
4,587,509 + -0.4
4,587,510 - -2.2
4,587,653 - AMB_RS21120 0.26 -0.2
4,587,667 + AMB_RS21120 0.28 -0.2
4,587,667 + AMB_RS21120 0.28 +1.0
4,587,668 - AMB_RS21120 0.28 -1.0
4,587,870 - AMB_RS21120 0.61 -0.8
4,587,883 + AMB_RS21120 0.64 +1.0
4,587,883 + AMB_RS21120 0.64 -1.1
4,587,883 + AMB_RS21120 0.64 -0.6
4,587,884 - AMB_RS21120 0.64 +2.2
4,587,884 - AMB_RS21120 0.64 -1.0

Or see this region's nucleotide sequence