Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20865 and AMB_RS20870 overlap by 4 nucleotides AMB_RS20870 and AMB_RS20875 are separated by 92 nucleotides
AMB_RS20865: AMB_RS20865 - rRNA pseudouridine synthase, at 4,530,276 to 4,531,322
_RS20865
AMB_RS20870: AMB_RS20870 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 4,531,319 to 4,532,032
_RS20870
AMB_RS20875: AMB_RS20875 - L-lactate permease, at 4,532,125 to 4,533,768
_RS20875
Position (kb) 4531
4532
4533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4530.329 kb on - strand at 4530.329 kb on - strand at 4530.329 kb on - strand at 4530.550 kb on + strand, within AMB_RS20865 at 4530.551 kb on - strand, within AMB_RS20865 at 4530.551 kb on - strand, within AMB_RS20865 at 4530.590 kb on - strand, within AMB_RS20865 at 4530.590 kb on - strand, within AMB_RS20865 at 4530.590 kb on - strand, within AMB_RS20865 at 4530.695 kb on - strand, within AMB_RS20865 at 4530.695 kb on - strand, within AMB_RS20865 at 4530.897 kb on - strand, within AMB_RS20865 at 4530.897 kb on - strand, within AMB_RS20865 at 4531.335 kb on - strand at 4531.335 kb on - strand at 4531.378 kb on - strand at 4531.939 kb on - strand, within AMB_RS20870 at 4532.003 kb on - strand at 4532.042 kb on + strand at 4532.042 kb on + strand at 4532.042 kb on + strand at 4532.042 kb on + strand at 4532.042 kb on + strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.043 kb on - strand at 4532.126 kb on + strand at 4532.150 kb on + strand at 4532.150 kb on + strand at 4532.150 kb on + strand at 4532.150 kb on + strand at 4532.150 kb on + strand at 4532.150 kb on + strand at 4532.151 kb on - strand at 4532.151 kb on - strand at 4532.151 kb on - strand at 4532.151 kb on - strand at 4532.456 kb on + strand, within AMB_RS20875 at 4532.523 kb on - strand, within AMB_RS20875 at 4532.523 kb on - strand, within AMB_RS20875 at 4532.523 kb on - strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.552 kb on + strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.553 kb on - strand, within AMB_RS20875 at 4532.688 kb on + strand, within AMB_RS20875 at 4532.688 kb on + strand, within AMB_RS20875 at 4532.689 kb on - strand, within AMB_RS20875 at 4532.689 kb on - strand, within AMB_RS20875 at 4532.690 kb on + strand, within AMB_RS20875 at 4532.691 kb on - strand, within AMB_RS20875 at 4532.691 kb on - strand, within AMB_RS20875 at 4532.691 kb on - strand, within AMB_RS20875 at 4532.691 kb on - strand, within AMB_RS20875 at 4532.691 kb on - strand, within AMB_RS20875 at 4532.900 kb on + strand, within AMB_RS20875 at 4532.900 kb on + strand, within AMB_RS20875 at 4532.901 kb on - strand, within AMB_RS20875 at 4532.901 kb on - strand, within AMB_RS20875
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 4,530,329 - -0.0 4,530,329 - -0.5 4,530,329 - +0.8 4,530,550 + AMB_RS20865 0.26 +0.1 4,530,551 - AMB_RS20865 0.26 -0.2 4,530,551 - AMB_RS20865 0.26 -0.4 4,530,590 - AMB_RS20865 0.30 -1.4 4,530,590 - AMB_RS20865 0.30 +1.6 4,530,590 - AMB_RS20865 0.30 -0.4 4,530,695 - AMB_RS20865 0.40 +0.6 4,530,695 - AMB_RS20865 0.40 +0.5 4,530,897 - AMB_RS20865 0.59 +0.2 4,530,897 - AMB_RS20865 0.59 +0.1 4,531,335 - +0.0 4,531,335 - +0.4 4,531,378 - +0.4 4,531,939 - AMB_RS20870 0.87 -0.4 4,532,003 - -0.1 4,532,042 + -0.6 4,532,042 + -0.8 4,532,042 + +0.3 4,532,042 + +0.2 4,532,042 + -0.2 4,532,043 - +3.1 4,532,043 - +0.3 4,532,043 - -1.0 4,532,043 - -0.2 4,532,043 - -0.2 4,532,043 - -0.7 4,532,043 - +0.3 4,532,043 - +2.2 4,532,043 - -0.4 4,532,126 + +0.2 4,532,150 + +1.3 4,532,150 + +0.9 4,532,150 + -0.5 4,532,150 + +1.2 4,532,150 + -0.3 4,532,150 + +0.5 4,532,151 - +0.2 4,532,151 - -0.2 4,532,151 - +0.7 4,532,151 - -1.4 4,532,456 + AMB_RS20875 0.20 -1.0 4,532,523 - AMB_RS20875 0.24 +0.8 4,532,523 - AMB_RS20875 0.24 -0.6 4,532,523 - AMB_RS20875 0.24 -0.4 4,532,552 + AMB_RS20875 0.26 -3.1 4,532,552 + AMB_RS20875 0.26 +0.2 4,532,552 + AMB_RS20875 0.26 -1.3 4,532,552 + AMB_RS20875 0.26 -0.1 4,532,552 + AMB_RS20875 0.26 -0.1 4,532,552 + AMB_RS20875 0.26 +0.4 4,532,552 + AMB_RS20875 0.26 +1.0 4,532,553 - AMB_RS20875 0.26 -0.1 4,532,553 - AMB_RS20875 0.26 +0.2 4,532,553 - AMB_RS20875 0.26 +0.0 4,532,553 - AMB_RS20875 0.26 +0.0 4,532,553 - AMB_RS20875 0.26 +0.0 4,532,553 - AMB_RS20875 0.26 +0.3 4,532,553 - AMB_RS20875 0.26 -0.3 4,532,553 - AMB_RS20875 0.26 -0.6 4,532,688 + AMB_RS20875 0.34 -2.4 4,532,688 + AMB_RS20875 0.34 +0.4 4,532,689 - AMB_RS20875 0.34 -0.1 4,532,689 - AMB_RS20875 0.34 -0.0 4,532,690 + AMB_RS20875 0.34 -1.0 4,532,691 - AMB_RS20875 0.34 -0.5 4,532,691 - AMB_RS20875 0.34 +1.0 4,532,691 - AMB_RS20875 0.34 +0.5 4,532,691 - AMB_RS20875 0.34 -1.4 4,532,691 - AMB_RS20875 0.34 +1.0 4,532,900 + AMB_RS20875 0.47 -1.4 4,532,900 + AMB_RS20875 0.47 -0.1 4,532,901 - AMB_RS20875 0.47 -0.3 4,532,901 - AMB_RS20875 0.47 +0.4
Or see this region's nucleotide sequence