Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20755 and AMB_RS20760 are separated by 185 nucleotides AMB_RS20760 and AMB_RS20765 are separated by 80 nucleotides AMB_RS20765 and AMB_RS20770 are separated by 64 nucleotides
AMB_RS20755: AMB_RS20755 - recombination protein RecR, at 4,508,991 to 4,509,584
_RS20755
AMB_RS20760: AMB_RS20760 - glutathione S-transferase, at 4,509,770 to 4,510,396
_RS20760
AMB_RS20765: AMB_RS20765 - leucyl aminopeptidase family protein, at 4,510,477 to 4,511,862
_RS20765
AMB_RS20770: AMB_RS20770 - TrkH family potassium uptake protein, at 4,511,927 to 4,513,375
_RS20770
Position (kb) 4510
4511
4512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4509.599 kb on - strand at 4509.772 kb on - strand at 4509.837 kb on + strand, within AMB_RS20760 at 4509.838 kb on - strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.870 kb on + strand, within AMB_RS20760 at 4509.871 kb on - strand, within AMB_RS20760 at 4509.871 kb on - strand, within AMB_RS20760 at 4509.871 kb on - strand, within AMB_RS20760 at 4509.871 kb on - strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.900 kb on + strand, within AMB_RS20760 at 4509.901 kb on - strand, within AMB_RS20760 at 4509.901 kb on - strand, within AMB_RS20760 at 4509.901 kb on - strand, within AMB_RS20760 at 4509.936 kb on + strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4509.937 kb on - strand, within AMB_RS20760 at 4510.176 kb on + strand, within AMB_RS20760 at 4510.176 kb on + strand, within AMB_RS20760 at 4510.177 kb on - strand, within AMB_RS20760 at 4510.456 kb on + strand at 4510.822 kb on + strand, within AMB_RS20765 at 4510.822 kb on + strand, within AMB_RS20765 at 4510.822 kb on + strand, within AMB_RS20765 at 4510.822 kb on + strand, within AMB_RS20765 at 4511.050 kb on + strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.873 kb on + strand at 4511.908 kb on - strand at 4512.446 kb on - strand, within AMB_RS20770 at 4512.488 kb on + strand, within AMB_RS20770 at 4512.488 kb on + strand, within AMB_RS20770 at 4512.489 kb on - strand, within AMB_RS20770 at 4512.746 kb on + strand, within AMB_RS20770 at 4512.746 kb on + strand, within AMB_RS20770
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 4,509,599 - -1.3 4,509,772 - -2.2 4,509,837 + AMB_RS20760 0.11 -0.3 4,509,838 - AMB_RS20760 0.11 -0.4 4,509,870 + AMB_RS20760 0.16 +0.4 4,509,870 + AMB_RS20760 0.16 -0.2 4,509,870 + AMB_RS20760 0.16 -0.1 4,509,870 + AMB_RS20760 0.16 -0.4 4,509,870 + AMB_RS20760 0.16 -1.4 4,509,870 + AMB_RS20760 0.16 -0.5 4,509,870 + AMB_RS20760 0.16 -1.1 4,509,871 - AMB_RS20760 0.16 -0.4 4,509,871 - AMB_RS20760 0.16 -1.5 4,509,871 - AMB_RS20760 0.16 +0.2 4,509,871 - AMB_RS20760 0.16 +0.0 4,509,900 + AMB_RS20760 0.21 -0.5 4,509,900 + AMB_RS20760 0.21 -0.8 4,509,900 + AMB_RS20760 0.21 -0.7 4,509,900 + AMB_RS20760 0.21 -0.8 4,509,900 + AMB_RS20760 0.21 -0.1 4,509,900 + AMB_RS20760 0.21 +1.9 4,509,900 + AMB_RS20760 0.21 +0.2 4,509,900 + AMB_RS20760 0.21 -1.0 4,509,900 + AMB_RS20760 0.21 -2.7 4,509,901 - AMB_RS20760 0.21 -1.7 4,509,901 - AMB_RS20760 0.21 -1.5 4,509,901 - AMB_RS20760 0.21 -0.6 4,509,936 + AMB_RS20760 0.26 -0.3 4,509,937 - AMB_RS20760 0.27 -0.6 4,509,937 - AMB_RS20760 0.27 -0.9 4,509,937 - AMB_RS20760 0.27 +0.0 4,509,937 - AMB_RS20760 0.27 +0.8 4,509,937 - AMB_RS20760 0.27 -2.4 4,509,937 - AMB_RS20760 0.27 -3.0 4,510,176 + AMB_RS20760 0.65 -1.3 4,510,176 + AMB_RS20760 0.65 -0.2 4,510,177 - AMB_RS20760 0.65 -2.4 4,510,456 + +0.8 4,510,822 + AMB_RS20765 0.25 -1.5 4,510,822 + AMB_RS20765 0.25 -0.0 4,510,822 + AMB_RS20765 0.25 +0.2 4,510,822 + AMB_RS20765 0.25 -0.3 4,511,050 + AMB_RS20765 0.41 -0.9 4,511,051 - AMB_RS20765 0.41 +0.8 4,511,051 - AMB_RS20765 0.41 -0.3 4,511,051 - AMB_RS20765 0.41 +0.0 4,511,873 + -0.2 4,511,908 - -0.2 4,512,446 - AMB_RS20770 0.36 -0.4 4,512,488 + AMB_RS20770 0.39 +0.6 4,512,488 + AMB_RS20770 0.39 -3.1 4,512,489 - AMB_RS20770 0.39 -1.0 4,512,746 + AMB_RS20770 0.57 -1.5 4,512,746 + AMB_RS20770 0.57 +0.6
Or see this region's nucleotide sequence