Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20645

Experiment: 30_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20640 and AMB_RS20645 overlap by 4 nucleotidesAMB_RS20645 and AMB_RS23800 are separated by 71 nucleotidesAMB_RS23800 and AMB_RS20655 overlap by 1 nucleotidesAMB_RS20655 and AMB_RS20660 are separated by 89 nucleotides AMB_RS20640: AMB_RS20640 - glutamate-5-semialdehyde dehydrogenase, at 4,484,500 to 4,485,768 _RS20640 AMB_RS20645: AMB_RS20645 - nicotinate-nucleotide adenylyltransferase, at 4,485,765 to 4,486,376 _RS20645 AMB_RS23800: AMB_RS23800 - ribosome silencing factor, at 4,486,448 to 4,486,804 _RS23800 AMB_RS20655: AMB_RS20655 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 4,486,804 to 4,487,262 _RS20655 AMB_RS20660: AMB_RS20660 - hypothetical protein, at 4,487,352 to 4,487,867 _RS20660 Position (kb) 4485 4486 4487Strain fitness (log2 ratio) -1 0 1at 4485.755 kb on + strandat 4486.375 kb on - strandat 4486.375 kb on - strandat 4486.375 kb on - strandat 4486.712 kb on + strand, within AMB_RS23800at 4486.712 kb on + strand, within AMB_RS23800at 4486.712 kb on + strand, within AMB_RS23800at 4486.712 kb on + strand, within AMB_RS23800at 4486.713 kb on - strand, within AMB_RS23800at 4486.713 kb on - strand, within AMB_RS23800at 4486.870 kb on + strand, within AMB_RS20655at 4486.870 kb on + strand, within AMB_RS20655at 4486.871 kb on - strand, within AMB_RS20655at 4486.871 kb on - strand, within AMB_RS20655at 4487.249 kb on - strandat 4487.369 kb on + strandat 4487.370 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
remove
4,485,755 + +0.6
4,486,375 - -1.1
4,486,375 - +0.3
4,486,375 - -1.2
4,486,712 + AMB_RS23800 0.74 -0.2
4,486,712 + AMB_RS23800 0.74 -1.0
4,486,712 + AMB_RS23800 0.74 -1.0
4,486,712 + AMB_RS23800 0.74 -0.3
4,486,713 - AMB_RS23800 0.74 -1.5
4,486,713 - AMB_RS23800 0.74 -0.2
4,486,870 + AMB_RS20655 0.14 -1.0
4,486,870 + AMB_RS20655 0.14 +1.6
4,486,871 - AMB_RS20655 0.15 +0.2
4,486,871 - AMB_RS20655 0.15 +1.6
4,487,249 - +0.5
4,487,369 + +0.1
4,487,370 - +0.6

Or see this region's nucleotide sequence