Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS18950 and AMB_RS18955 overlap by 8 nucleotides AMB_RS18955 and AMB_RS18960 are separated by 150 nucleotides
AMB_RS18950: AMB_RS18950 - CpaF family protein, at 4,119,323 to 4,120,711
_RS18950
AMB_RS18955: AMB_RS18955 - Flp pilus assembly protein TadB, at 4,120,704 to 4,121,696
_RS18955
AMB_RS18960: AMB_RS18960 - type II secretion system F family protein, at 4,121,847 to 4,122,806
_RS18960
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4119.719 kb on + strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4120.095 kb on - strand, within AMB_RS18950 at 4120.095 kb on - strand, within AMB_RS18950 at 4120.319 kb on - strand, within AMB_RS18950 at 4120.410 kb on - strand, within AMB_RS18950 at 4120.662 kb on - strand at 4120.662 kb on - strand at 4121.010 kb on + strand, within AMB_RS18955 at 4121.010 kb on + strand, within AMB_RS18955 at 4121.010 kb on + strand, within AMB_RS18955 at 4121.010 kb on + strand, within AMB_RS18955 at 4121.010 kb on + strand, within AMB_RS18955 at 4121.045 kb on - strand, within AMB_RS18955 at 4121.379 kb on + strand, within AMB_RS18955 at 4121.380 kb on - strand, within AMB_RS18955 at 4121.380 kb on - strand, within AMB_RS18955 at 4121.497 kb on - strand, within AMB_RS18955 at 4121.497 kb on - strand, within AMB_RS18955 at 4121.497 kb on - strand, within AMB_RS18955 at 4121.583 kb on + strand, within AMB_RS18955 at 4121.584 kb on - strand, within AMB_RS18955 at 4121.584 kb on - strand, within AMB_RS18955 at 4121.584 kb on - strand, within AMB_RS18955 at 4121.584 kb on - strand, within AMB_RS18955 at 4121.743 kb on - strand at 4121.781 kb on + strand at 4121.782 kb on - strand at 4121.782 kb on - strand at 4121.782 kb on - strand at 4121.782 kb on - strand at 4121.784 kb on + strand at 4121.784 kb on + strand at 4121.784 kb on + strand at 4121.784 kb on + strand at 4121.784 kb on + strand at 4121.785 kb on - strand at 4121.785 kb on - strand at 4121.785 kb on - strand at 4122.229 kb on - strand, within AMB_RS18960 at 4122.229 kb on - strand, within AMB_RS18960 at 4122.229 kb on - strand, within AMB_RS18960 at 4122.317 kb on + strand, within AMB_RS18960 at 4122.318 kb on - strand, within AMB_RS18960 at 4122.612 kb on + strand, within AMB_RS18960 at 4122.612 kb on + strand, within AMB_RS18960 at 4122.613 kb on - strand, within AMB_RS18960 at 4122.613 kb on - strand, within AMB_RS18960
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 4,119,719 + AMB_RS18950 0.29 -1.4 4,119,720 - AMB_RS18950 0.29 -0.6 4,119,720 - AMB_RS18950 0.29 -0.2 4,119,720 - AMB_RS18950 0.29 -0.1 4,119,720 - AMB_RS18950 0.29 +1.0 4,119,720 - AMB_RS18950 0.29 +0.7 4,120,095 - AMB_RS18950 0.56 -0.9 4,120,095 - AMB_RS18950 0.56 -0.0 4,120,319 - AMB_RS18950 0.72 +0.4 4,120,410 - AMB_RS18950 0.78 -0.5 4,120,662 - -2.2 4,120,662 - -1.3 4,121,010 + AMB_RS18955 0.31 -1.3 4,121,010 + AMB_RS18955 0.31 -1.7 4,121,010 + AMB_RS18955 0.31 -1.6 4,121,010 + AMB_RS18955 0.31 -2.2 4,121,010 + AMB_RS18955 0.31 -0.5 4,121,045 - AMB_RS18955 0.34 -0.4 4,121,379 + AMB_RS18955 0.68 +0.2 4,121,380 - AMB_RS18955 0.68 -0.2 4,121,380 - AMB_RS18955 0.68 +0.2 4,121,497 - AMB_RS18955 0.80 +2.3 4,121,497 - AMB_RS18955 0.80 -1.0 4,121,497 - AMB_RS18955 0.80 -0.0 4,121,583 + AMB_RS18955 0.89 +0.6 4,121,584 - AMB_RS18955 0.89 -0.4 4,121,584 - AMB_RS18955 0.89 -1.4 4,121,584 - AMB_RS18955 0.89 +0.1 4,121,584 - AMB_RS18955 0.89 +0.0 4,121,743 - -0.1 4,121,781 + -0.2 4,121,782 - -0.7 4,121,782 - -0.0 4,121,782 - -2.0 4,121,782 - +2.5 4,121,784 + -2.0 4,121,784 + -2.1 4,121,784 + -1.2 4,121,784 + +0.1 4,121,784 + -4.0 4,121,785 - +0.7 4,121,785 - -3.0 4,121,785 - -0.4 4,122,229 - AMB_RS18960 0.40 +0.3 4,122,229 - AMB_RS18960 0.40 -0.9 4,122,229 - AMB_RS18960 0.40 +0.4 4,122,317 + AMB_RS18960 0.49 +0.3 4,122,318 - AMB_RS18960 0.49 -0.3 4,122,612 + AMB_RS18960 0.80 -0.3 4,122,612 + AMB_RS18960 0.80 -0.2 4,122,613 - AMB_RS18960 0.80 +3.3 4,122,613 - AMB_RS18960 0.80 -0.1
Or see this region's nucleotide sequence