Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18440

Experiment: 30_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_nonmag_2
4,002,759	+		AMB_RS18435	0.60	-0.6
4,002,759	+		AMB_RS18435	0.60	-1.3
4,002,759	+		AMB_RS18435	0.60	-0.0
4,002,759	+		AMB_RS18435	0.60	+0.1
4,002,759	+		AMB_RS18435	0.60	-0.2
4,002,759	+		AMB_RS18435	0.60	-0.2
4,002,759	+		AMB_RS18435	0.60	+0.8
4,002,759	+		AMB_RS18435	0.60	-0.3
4,002,759	+		AMB_RS18435	0.60	+0.5
4,002,759	+		AMB_RS18435	0.60	+0.1
4,002,760	-		AMB_RS18435	0.60	+1.7
4,002,760	-		AMB_RS18435	0.60	-0.3
4,002,760	-		AMB_RS18435	0.60	+0.3
4,002,760	-		AMB_RS18435	0.60	-1.1
4,002,760	-		AMB_RS18435	0.60	-1.0
4,002,760	-		AMB_RS18435	0.60	+0.3
4,002,760	-		AMB_RS18435	0.60	+0.0
4,002,760	-		AMB_RS18435	0.60	-0.8
4,002,760	-		AMB_RS18435	0.60	+0.2
4,002,760	-		AMB_RS18435	0.60	-0.8
4,002,775	+		AMB_RS18435	0.64	-0.6
4,002,775	+		AMB_RS18435	0.64	+0.2
4,002,776	-		AMB_RS18435	0.64	+1.5
4,002,806	+		AMB_RS18435	0.72	+0.1
4,002,818	+		AMB_RS18435	0.76	+0.6
4,002,819	-		AMB_RS18435	0.76	+0.8
4,002,870	+		AMB_RS18435	0.90	+0.9
4,002,959	+				-0.7
4,002,959	+				+0.7
4,002,960	-				-0.5
4,003,280	+				-1.7
4,003,444	+				-0.7
4,003,445	-				-0.2
4,003,445	-				-1.3
4,003,445	-				+0.6
4,003,445	-				-1.4
4,003,445	-				-0.6
4,003,445	-				+0.3
4,003,445	-				+0.1
4,003,532	+				-0.3
4,003,533	-				-0.6
4,003,548	+				-0.4
4,003,548	+				-2.5
4,003,548	+				+0.1
4,003,548	+				-0.8
4,003,548	+				-1.0
4,003,548	+				+0.2
4,003,548	+				+0.0
4,003,549	-				-0.6
4,003,549	-				-0.0
4,003,549	-				-0.7
4,003,549	-				-1.4
4,003,549	-				+2.1
4,003,549	-				-1.6
4,003,594	+				+1.4
4,003,594	+				-0.5
4,003,595	-				+0.0
4,003,595	-				-2.0
4,003,639	+				+0.5
4,003,640	-				+0.2
4,003,640	-				-2.0
4,003,640	-				+0.1
4,003,640	-				-4.2
4,003,654	+				-0.6
4,003,690	+				-0.5
4,003,691	-				+0.0
4,003,691	-				-0.1
4,003,695	+				+0.6
4,003,695	+				-1.5
4,003,695	+				-3.2
4,003,695	+				+0.7
4,003,731	+				-1.2
4,003,732	-				-2.0
4,003,776	+		AMB_RS18440	0.19	+0.3
4,003,887	-		AMB_RS18440	0.48	+1.6
4,003,887	-		AMB_RS18440	0.48	+0.6
4,003,888	+		AMB_RS18440	0.48	-0.0
4,003,888	+		AMB_RS18440	0.48	-0.5
4,003,888	+		AMB_RS18440	0.48	-3.3
4,003,888	+		AMB_RS18440	0.48	+1.7
4,003,888	+		AMB_RS18440	0.48	-0.7
4,003,888	+		AMB_RS18440	0.48	-0.1
4,003,888	+		AMB_RS18440	0.48	-0.3
4,003,888	+		AMB_RS18440	0.48	+0.8
4,003,889	-		AMB_RS18440	0.48	-0.0
4,003,889	-		AMB_RS18440	0.48	+2.0
4,003,889	-		AMB_RS18440	0.48	-0.9
4,003,889	-		AMB_RS18440	0.48	-0.4
4,003,889	-		AMB_RS18440	0.48	+0.7
4,003,890	+		AMB_RS18440	0.48	+0.1
4,003,890	+		AMB_RS18440	0.48	+0.1
4,003,890	+		AMB_RS18440	0.48	-2.0
4,003,890	+		AMB_RS18440	0.48	-0.4
4,003,891	-		AMB_RS18440	0.49	-0.3
4,003,891	-		AMB_RS18440	0.49	+1.3
4,003,927	+		AMB_RS18440	0.58	+0.0
4,003,928	-		AMB_RS18440	0.58	+1.3
4,003,928	-		AMB_RS18440	0.58	-0.6
4,003,928	-		AMB_RS18440	0.58	-0.3
4,003,928	-		AMB_RS18440	0.58	+1.0
4,003,990	-		AMB_RS18440	0.74	-0.7
4,004,022	+		AMB_RS18440	0.83	-1.2
4,004,141	-				-2.1
4,004,199	+				-2.7
4,004,201	+				-1.5
4,004,201	+				-0.0
4,004,201	+				-0.8
4,004,201	+				-1.2
4,004,201	+				-0.4
4,004,201	+				+2.4
4,004,201	+				+1.1
4,004,202	-				+1.0
4,004,202	-				-0.1
4,004,202	-				+0.5
4,004,202	-				-0.5
4,004,202	-				-2.6
4,004,202	-				+2.4
4,004,202	-				+0.6
4,004,202	-				+0.1
4,004,202	-				-0.5
4,004,251	+				-0.4
4,004,251	+				+0.9
4,004,251	+				+1.3
4,004,251	+				+1.8
4,004,251	+				+0.6
4,004,251	+				-0.3
4,004,251	+				-0.6
4,004,251	+				+0.5
4,004,251	+				+0.1
4,004,252	-				+0.7
4,004,252	-				-0.2
4,004,252	-				-2.7
4,004,252	-				-0.2
4,004,252	-				-1.1
4,004,252	-				-0.7
4,004,252	-				-0.2
4,004,252	-				-0.7
4,004,252	-				+0.7
4,004,252	-				-1.4
4,004,252	-				-1.4
4,004,252	-				-1.2
4,004,252	-				-0.8
4,004,252	-				-2.8
4,004,453	+				-0.4
4,004,453	+				-2.0
4,004,528	+		AMB_RS18445	0.13	-1.4
4,004,528	+		AMB_RS18445	0.13	-0.1
4,004,529	-		AMB_RS18445	0.14	+0.3
4,004,529	-		AMB_RS18445	0.14	-0.1
4,004,529	-		AMB_RS18445	0.14	+0.3
4,004,552	+		AMB_RS18445	0.23	-0.2
4,004,552	+		AMB_RS18445	0.23	-1.2
4,004,553	-		AMB_RS18445	0.23	+0.1
4,004,553	-		AMB_RS18445	0.23	-0.4
4,004,553	-		AMB_RS18445	0.23	-0.6
4,004,555	+		AMB_RS18445	0.24	+0.3
4,004,556	-		AMB_RS18445	0.24	-0.5
4,004,556	-		AMB_RS18445	0.24	+1.8
4,004,556	-		AMB_RS18445	0.24	-2.7
4,004,579	+		AMB_RS18445	0.33	-1.5
4,004,579	+		AMB_RS18445	0.33	-0.2
4,004,580	-		AMB_RS18445	0.34	-0.0
4,004,580	-		AMB_RS18445	0.34	+0.2
4,004,580	-		AMB_RS18445	0.34	+0.4
4,004,580	-		AMB_RS18445	0.34	-0.1
4,004,580	-		AMB_RS18445	0.34	-0.7
4,004,639	+		AMB_RS18445	0.57	-1.2
4,004,639	+		AMB_RS18445	0.57	+1.0
4,004,640	-		AMB_RS18445	0.57	+0.1
4,004,787	+		AMB_RS24660	0.16	-2.5
4,004,787	+		AMB_RS24660	0.16	+0.2
4,004,788	-		AMB_RS24660	0.16	-0.0
4,004,788	-		AMB_RS24660	0.16	+0.2
4,004,817	+		AMB_RS24660	0.27	-0.2
4,004,817	+		AMB_RS24660	0.27	-2.9
4,004,817	+		AMB_RS24660	0.27	+0.3
4,004,832	-		AMB_RS24660	0.33	-0.4
4,004,921	+		AMB_RS24660	0.67	+0.4
4,004,921	+		AMB_RS24660	0.67	+0.5
4,004,921	+		AMB_RS24660	0.67	+0.6
4,004,922	-		AMB_RS24660	0.67	+2.0
4,004,922	-		AMB_RS24660	0.67	-0.3
4,004,933	+		AMB_RS24660	0.71	-0.7
4,004,933	+		AMB_RS24660	0.71	+1.0
4,005,062	+				-0.9