Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11840

Experiment: 30_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS11835 and AMB_RS11840 are separated by 134 nucleotidesAMB_RS11840 and AMB_RS11845 overlap by 4 nucleotidesAMB_RS11845 and AMB_RS11850 are separated by 1 nucleotides AMB_RS11835: AMB_RS11835 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 2,549,116 to 2,550,264 _RS11835 AMB_RS11840: AMB_RS11840 - 6,7-dimethyl-8-ribityllumazine synthase, at 2,550,399 to 2,550,851 _RS11840 AMB_RS11845: AMB_RS11845 - N utilization substance protein B, at 2,550,848 to 2,551,318 _RS11845 AMB_RS11850: AMB_RS11850 - thiamine-phosphate kinase, at 2,551,320 to 2,552,331 _RS11850 Position (kb) 2550 2551Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2550.337 kb on + strandat 2550.338 kb on - strandat 2550.378 kb on + strandat 2550.378 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
remove
2,550,337 + +0.6
2,550,338 - -2.5
2,550,378 + -0.8
2,550,378 + +0.2
2,550,382 + -0.6
2,550,382 + -3.1
2,550,382 + -0.2
2,550,382 + -1.0
2,550,382 + +1.9
2,550,382 + -1.1

Or see this region's nucleotide sequence