Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08290

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08280 and AMB_RS08285 are separated by 0 nucleotidesAMB_RS08285 and AMB_RS08290 are separated by 3 nucleotidesAMB_RS08290 and AMB_RS08295 overlap by 8 nucleotides AMB_RS08280: AMB_RS08280 - hydrogenase expression/formation protein HypE, at 1,776,475 to 1,777,524 _RS08280 AMB_RS08285: AMB_RS08285 - DUF2442 domain-containing protein, at 1,777,525 to 1,777,788 _RS08285 AMB_RS08290: AMB_RS08290 - DUF4160 domain-containing protein, at 1,777,792 to 1,778,052 _RS08290 AMB_RS08295: AMB_RS08295 - hydrogenase formation protein HypD, at 1,778,045 to 1,779,184 _RS08295 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1776.882 kb on + strand, within AMB_RS08280at 1776.882 kb on + strand, within AMB_RS08280at 1776.882 kb on + strand, within AMB_RS08280at 1776.882 kb on + strand, within AMB_RS08280at 1776.882 kb on + strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1776.883 kb on - strand, within AMB_RS08280at 1777.316 kb on + strand, within AMB_RS08280at 1777.316 kb on + strand, within AMB_RS08280at 1777.316 kb on + strand, within AMB_RS08280at 1777.317 kb on - strand, within AMB_RS08280at 1777.317 kb on - strand, within AMB_RS08280at 1777.794 kb on - strandat 1777.794 kb on - strandat 1777.885 kb on + strand, within AMB_RS08290at 1777.885 kb on + strand, within AMB_RS08290at 1777.885 kb on + strand, within AMB_RS08290at 1777.885 kb on + strand, within AMB_RS08290at 1777.885 kb on + strand, within AMB_RS08290at 1777.886 kb on - strand, within AMB_RS08290at 1777.886 kb on - strand, within AMB_RS08290at 1777.971 kb on - strand, within AMB_RS08290at 1778.007 kb on - strand, within AMB_RS08290at 1778.007 kb on - strand, within AMB_RS08290at 1778.009 kb on + strand, within AMB_RS08290at 1778.009 kb on + strand, within AMB_RS08290at 1778.009 kb on + strand, within AMB_RS08290at 1778.009 kb on + strand, within AMB_RS08290at 1778.010 kb on - strand, within AMB_RS08290at 1778.010 kb on - strand, within AMB_RS08290at 1778.010 kb on - strand, within AMB_RS08290at 1778.010 kb on - strand, within AMB_RS08290at 1778.010 kb on - strand, within AMB_RS08290at 1778.082 kb on + strandat 1778.082 kb on + strandat 1778.083 kb on - strandat 1778.283 kb on + strand, within AMB_RS08295at 1778.284 kb on - strand, within AMB_RS08295at 1778.311 kb on - strand, within AMB_RS08295at 1778.526 kb on + strand, within AMB_RS08295at 1778.526 kb on + strand, within AMB_RS08295at 1778.527 kb on - strand, within AMB_RS08295at 1778.527 kb on - strand, within AMB_RS08295at 1778.541 kb on + strand, within AMB_RS08295at 1778.541 kb on + strand, within AMB_RS08295at 1778.541 kb on + strand, within AMB_RS08295at 1778.541 kb on + strand, within AMB_RS08295at 1778.542 kb on - strand, within AMB_RS08295at 1778.542 kb on - strand, within AMB_RS08295at 1778.542 kb on - strand, within AMB_RS08295at 1778.542 kb on - strand, within AMB_RS08295at 1778.547 kb on + strand, within AMB_RS08295at 1778.547 kb on + strand, within AMB_RS08295at 1778.829 kb on + strand, within AMB_RS08295at 1778.829 kb on + strand, within AMB_RS08295at 1778.830 kb on - strand, within AMB_RS08295at 1778.830 kb on - strand, within AMB_RS08295at 1778.913 kb on + strand, within AMB_RS08295at 1778.914 kb on - strand, within AMB_RS08295

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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1,776,882 + AMB_RS08280 0.39 -0.3
1,776,882 + AMB_RS08280 0.39 +1.1
1,776,882 + AMB_RS08280 0.39 -0.4
1,776,882 + AMB_RS08280 0.39 +0.3
1,776,882 + AMB_RS08280 0.39 -0.0
1,776,883 - AMB_RS08280 0.39 -0.7
1,776,883 - AMB_RS08280 0.39 +0.7
1,776,883 - AMB_RS08280 0.39 +0.6
1,776,883 - AMB_RS08280 0.39 -0.3
1,776,883 - AMB_RS08280 0.39 +0.2
1,776,883 - AMB_RS08280 0.39 -0.2
1,776,883 - AMB_RS08280 0.39 +0.5
1,776,883 - AMB_RS08280 0.39 -1.6
1,776,883 - AMB_RS08280 0.39 +1.1
1,777,316 + AMB_RS08280 0.80 -0.1
1,777,316 + AMB_RS08280 0.80 +0.2
1,777,316 + AMB_RS08280 0.80 +0.5
1,777,317 - AMB_RS08280 0.80 +0.5
1,777,317 - AMB_RS08280 0.80 -0.9
1,777,794 - -2.4
1,777,794 - +0.4
1,777,885 + AMB_RS08290 0.36 -0.5
1,777,885 + AMB_RS08290 0.36 -0.1
1,777,885 + AMB_RS08290 0.36 +0.4
1,777,885 + AMB_RS08290 0.36 -3.4
1,777,885 + AMB_RS08290 0.36 -0.4
1,777,886 - AMB_RS08290 0.36 -0.1
1,777,886 - AMB_RS08290 0.36 -1.6
1,777,971 - AMB_RS08290 0.69 -0.7
1,778,007 - AMB_RS08290 0.82 -2.3
1,778,007 - AMB_RS08290 0.82 -0.2
1,778,009 + AMB_RS08290 0.83 -1.6
1,778,009 + AMB_RS08290 0.83 -0.4
1,778,009 + AMB_RS08290 0.83 -0.8
1,778,009 + AMB_RS08290 0.83 -0.9
1,778,010 - AMB_RS08290 0.84 +0.6
1,778,010 - AMB_RS08290 0.84 -1.3
1,778,010 - AMB_RS08290 0.84 -0.5
1,778,010 - AMB_RS08290 0.84 -0.1
1,778,010 - AMB_RS08290 0.84 +0.5
1,778,082 + -2.3
1,778,082 + -0.4
1,778,083 - -1.8
1,778,283 + AMB_RS08295 0.21 -0.5
1,778,284 - AMB_RS08295 0.21 -1.2
1,778,311 - AMB_RS08295 0.23 -0.3
1,778,526 + AMB_RS08295 0.42 -0.4
1,778,526 + AMB_RS08295 0.42 +0.4
1,778,527 - AMB_RS08295 0.42 -0.3
1,778,527 - AMB_RS08295 0.42 -0.3
1,778,541 + AMB_RS08295 0.44 -0.1
1,778,541 + AMB_RS08295 0.44 -0.4
1,778,541 + AMB_RS08295 0.44 +0.0
1,778,541 + AMB_RS08295 0.44 -0.2
1,778,542 - AMB_RS08295 0.44 -0.4
1,778,542 - AMB_RS08295 0.44 -1.3
1,778,542 - AMB_RS08295 0.44 -0.4
1,778,542 - AMB_RS08295 0.44 +0.6
1,778,547 + AMB_RS08295 0.44 +2.4
1,778,547 + AMB_RS08295 0.44 -0.8
1,778,829 + AMB_RS08295 0.69 +0.6
1,778,829 + AMB_RS08295 0.69 -3.1
1,778,830 - AMB_RS08295 0.69 +1.9
1,778,830 - AMB_RS08295 0.69 -1.0
1,778,913 + AMB_RS08295 0.76 -0.6
1,778,914 - AMB_RS08295 0.76 -0.2

Or see this region's nucleotide sequence