Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07690 and AMB_RS07695 overlap by 4 nucleotides AMB_RS07695 and AMB_RS07700 overlap by 56 nucleotides AMB_RS07700 and AMB_RS07705 are separated by 148 nucleotides AMB_RS07705 and AMB_RS07710 are separated by 123 nucleotides AMB_RS07710 and AMB_RS07715 are separated by 15 nucleotides AMB_RS07715 and AMB_RS07720 overlap by 23 nucleotides
AMB_RS07690: AMB_RS07690 - lysozyme, at 1,656,473 to 1,656,961
_RS07690
AMB_RS07695: AMB_RS07695 - hypothetical protein, at 1,656,958 to 1,657,440
_RS07695
AMB_RS07700: AMB_RS07700 - hypothetical protein, at 1,657,385 to 1,657,570
_RS07700
AMB_RS07705: AMB_RS07705 - tRNA-Thr, at 1,657,719 to 1,657,794
_RS07705
AMB_RS07710: AMB_RS07710 - hypothetical protein, at 1,657,918 to 1,658,124
_RS07710
AMB_RS07715: AMB_RS07715 - deoxycytidine triphosphate deaminase, at 1,658,140 to 1,658,694
_RS07715
AMB_RS07720: AMB_RS07720 - hypothetical protein, at 1,658,672 to 1,660,207
_RS07720
Position (kb) 1657
1658
1659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1656.957 kb on + strand at 1656.958 kb on - strand at 1657.063 kb on + strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.064 kb on - strand, within AMB_RS07695 at 1657.098 kb on + strand, within AMB_RS07695 at 1657.255 kb on - strand, within AMB_RS07695 at 1657.493 kb on + strand, within AMB_RS07700 at 1657.493 kb on + strand, within AMB_RS07700 at 1657.493 kb on + strand, within AMB_RS07700 at 1657.494 kb on - strand, within AMB_RS07700 at 1657.494 kb on - strand, within AMB_RS07700 at 1657.657 kb on + strand at 1657.658 kb on - strand at 1657.838 kb on - strand at 1658.105 kb on + strand at 1658.106 kb on - strand at 1658.239 kb on + strand, within AMB_RS07715 at 1658.240 kb on - strand, within AMB_RS07715 at 1658.254 kb on + strand, within AMB_RS07715 at 1658.254 kb on + strand, within AMB_RS07715 at 1658.255 kb on - strand, within AMB_RS07715 at 1658.261 kb on - strand, within AMB_RS07715 at 1658.261 kb on - strand, within AMB_RS07715 at 1658.368 kb on - strand, within AMB_RS07715 at 1658.368 kb on - strand, within AMB_RS07715 at 1658.416 kb on + strand, within AMB_RS07715 at 1658.467 kb on + strand, within AMB_RS07715 at 1658.467 kb on + strand, within AMB_RS07715 at 1658.467 kb on + strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.468 kb on - strand, within AMB_RS07715 at 1658.573 kb on - strand, within AMB_RS07715 at 1658.573 kb on - strand, within AMB_RS07715 at 1658.635 kb on + strand, within AMB_RS07715 at 1658.635 kb on + strand, within AMB_RS07715 at 1658.635 kb on + strand, within AMB_RS07715 at 1658.636 kb on - strand, within AMB_RS07715 at 1658.656 kb on + strand at 1658.656 kb on + strand at 1658.656 kb on + strand at 1658.657 kb on - strand at 1658.657 kb on - strand at 1658.657 kb on - strand at 1658.770 kb on + strand at 1658.770 kb on + strand at 1658.770 kb on + strand at 1658.771 kb on - strand at 1658.918 kb on + strand, within AMB_RS07720 at 1658.918 kb on + strand, within AMB_RS07720 at 1658.918 kb on + strand, within AMB_RS07720 at 1658.919 kb on - strand, within AMB_RS07720 at 1658.919 kb on - strand, within AMB_RS07720 at 1658.919 kb on - strand, within AMB_RS07720
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 1,656,957 + +1.1 1,656,958 - -0.2 1,657,063 + AMB_RS07695 0.22 -0.6 1,657,064 - AMB_RS07695 0.22 +0.6 1,657,064 - AMB_RS07695 0.22 +0.3 1,657,064 - AMB_RS07695 0.22 -1.8 1,657,064 - AMB_RS07695 0.22 +1.6 1,657,064 - AMB_RS07695 0.22 -0.1 1,657,064 - AMB_RS07695 0.22 -1.4 1,657,064 - AMB_RS07695 0.22 +3.3 1,657,098 + AMB_RS07695 0.29 +1.0 1,657,255 - AMB_RS07695 0.61 -0.1 1,657,493 + AMB_RS07700 0.58 -1.0 1,657,493 + AMB_RS07700 0.58 +0.2 1,657,493 + AMB_RS07700 0.58 -1.4 1,657,494 - AMB_RS07700 0.59 +0.0 1,657,494 - AMB_RS07700 0.59 +1.6 1,657,657 + +0.1 1,657,658 - -0.3 1,657,838 - -2.3 1,658,105 + +0.2 1,658,106 - -0.3 1,658,239 + AMB_RS07715 0.18 -2.3 1,658,240 - AMB_RS07715 0.18 -1.3 1,658,254 + AMB_RS07715 0.21 -2.3 1,658,254 + AMB_RS07715 0.21 +0.5 1,658,255 - AMB_RS07715 0.21 -0.7 1,658,261 - AMB_RS07715 0.22 +1.0 1,658,261 - AMB_RS07715 0.22 +0.3 1,658,368 - AMB_RS07715 0.41 -0.4 1,658,368 - AMB_RS07715 0.41 -0.7 1,658,416 + AMB_RS07715 0.50 -1.7 1,658,467 + AMB_RS07715 0.59 -0.0 1,658,467 + AMB_RS07715 0.59 +1.6 1,658,467 + AMB_RS07715 0.59 -2.0 1,658,468 - AMB_RS07715 0.59 -0.2 1,658,468 - AMB_RS07715 0.59 -0.8 1,658,468 - AMB_RS07715 0.59 -0.5 1,658,468 - AMB_RS07715 0.59 -0.1 1,658,468 - AMB_RS07715 0.59 -1.7 1,658,468 - AMB_RS07715 0.59 +0.1 1,658,468 - AMB_RS07715 0.59 +0.5 1,658,573 - AMB_RS07715 0.78 +0.7 1,658,573 - AMB_RS07715 0.78 +0.5 1,658,635 + AMB_RS07715 0.89 -0.9 1,658,635 + AMB_RS07715 0.89 +0.1 1,658,635 + AMB_RS07715 0.89 +0.2 1,658,636 - AMB_RS07715 0.89 +0.8 1,658,656 + +0.6 1,658,656 + +0.8 1,658,656 + +0.7 1,658,657 - +0.3 1,658,657 - +0.2 1,658,657 - -0.3 1,658,770 + +0.2 1,658,770 + +0.9 1,658,770 + -3.1 1,658,771 - +0.7 1,658,918 + AMB_RS07720 0.16 +1.4 1,658,918 + AMB_RS07720 0.16 +0.2 1,658,918 + AMB_RS07720 0.16 +2.4 1,658,919 - AMB_RS07720 0.16 -0.5 1,658,919 - AMB_RS07720 0.16 -0.9 1,658,919 - AMB_RS07720 0.16 -1.0
Or see this region's nucleotide sequence