Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06095

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06080 and AMB_RS06085 are separated by 86 nucleotidesAMB_RS06085 and AMB_RS06090 overlap by 4 nucleotidesAMB_RS06090 and AMB_RS06095 overlap by 4 nucleotidesAMB_RS06095 and AMB_RS06100 overlap by 4 nucleotidesAMB_RS06100 and AMB_RS24015 are separated by 64 nucleotides AMB_RS06080: AMB_RS06080 - hypothetical protein, at 1,272,479 to 1,272,832 _RS06080 AMB_RS06085: AMB_RS06085 - hypothetical protein, at 1,272,919 to 1,273,191 _RS06085 AMB_RS06090: AMB_RS06090 - DUF2924 domain-containing protein, at 1,273,188 to 1,273,637 _RS06090 AMB_RS06095: AMB_RS06095 - recombinase family protein, at 1,273,634 to 1,274,977 _RS06095 AMB_RS06100: AMB_RS06100 - hypothetical protein, at 1,274,974 to 1,275,369 _RS06100 AMB_RS24015: AMB_RS24015 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,275,434 to 1,276,585 _RS24015 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1272.818 kb on - strandat 1272.818 kb on - strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.831 kb on - strandat 1272.831 kb on - strandat 1272.919 kb on - strandat 1272.938 kb on + strandat 1272.939 kb on - strandat 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.323 kb on + strand, within AMB_RS06090at 1273.324 kb on - strand, within AMB_RS06090at 1273.393 kb on - strand, within AMB_RS06090at 1273.512 kb on + strand, within AMB_RS06090at 1273.513 kb on - strand, within AMB_RS06090at 1273.513 kb on - strand, within AMB_RS06090at 1273.518 kb on + strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.680 kb on - strandat 1273.680 kb on - strandat 1273.680 kb on - strandat 1273.681 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.805 kb on + strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.984 kb on - strand, within AMB_RS06095at 1274.156 kb on + strand, within AMB_RS06095at 1274.354 kb on + strand, within AMB_RS06095at 1274.355 kb on - strand, within AMB_RS06095at 1274.355 kb on - strand, within AMB_RS06095at 1274.355 kb on - strand, within AMB_RS06095at 1274.378 kb on + strand, within AMB_RS06095at 1274.378 kb on + strand, within AMB_RS06095at 1274.545 kb on - strand, within AMB_RS06095at 1274.545 kb on - strand, within AMB_RS06095at 1274.612 kb on + strand, within AMB_RS06095at 1274.613 kb on - strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1275.078 kb on - strand, within AMB_RS06100at 1275.136 kb on + strand, within AMB_RS06100at 1275.137 kb on - strand, within AMB_RS06100at 1275.137 kb on - strand, within AMB_RS06100at 1275.217 kb on + strand, within AMB_RS06100at 1275.217 kb on + strand, within AMB_RS06100at 1275.218 kb on - strand, within AMB_RS06100at 1275.218 kb on - strand, within AMB_RS06100at 1275.232 kb on + strand, within AMB_RS06100at 1275.372 kb on + strandat 1275.373 kb on - strandat 1275.373 kb on - strandat 1275.453 kb on + strandat 1275.453 kb on + strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.459 kb on + strandat 1275.507 kb on + strandat 1275.508 kb on - strandat 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.559 kb on - strand, within AMB_RS24015at 1275.615 kb on + strand, within AMB_RS24015at 1275.615 kb on + strand, within AMB_RS24015at 1275.666 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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1,272,818 - -0.4
1,272,818 - +1.2
1,272,830 + -0.7
1,272,830 + +1.0
1,272,830 + -2.4
1,272,830 + +0.2
1,272,831 - -0.2
1,272,831 - -1.7
1,272,919 - +0.2
1,272,938 + +0.4
1,272,939 - -0.6
1,273,015 - AMB_RS06085 0.35 -0.3
1,273,015 - AMB_RS06085 0.35 +2.6
1,273,015 - AMB_RS06085 0.35 -0.4
1,273,015 - AMB_RS06085 0.35 -1.1
1,273,100 + AMB_RS06085 0.66 -0.3
1,273,100 + AMB_RS06085 0.66 -0.4
1,273,100 + AMB_RS06085 0.66 +0.5
1,273,323 + AMB_RS06090 0.30 +0.8
1,273,324 - AMB_RS06090 0.30 +0.3
1,273,393 - AMB_RS06090 0.46 -0.4
1,273,512 + AMB_RS06090 0.72 +0.6
1,273,513 - AMB_RS06090 0.72 -0.2
1,273,513 - AMB_RS06090 0.72 +0.5
1,273,518 + AMB_RS06090 0.73 -0.3
1,273,519 - AMB_RS06090 0.74 -0.5
1,273,519 - AMB_RS06090 0.74 -1.3
1,273,519 - AMB_RS06090 0.74 -0.0
1,273,679 + +0.3
1,273,679 + -1.3
1,273,679 + -0.8
1,273,679 + -0.9
1,273,679 + -0.6
1,273,680 - +1.4
1,273,680 - +0.5
1,273,680 - -1.8
1,273,681 + +0.6
1,273,757 + -1.2
1,273,757 + +0.3
1,273,757 + -0.8
1,273,757 + -2.6
1,273,758 - +0.6
1,273,758 - -1.0
1,273,758 - -0.4
1,273,758 - -1.5
1,273,758 - +1.0
1,273,805 + AMB_RS06095 0.13 +0.0
1,273,806 - AMB_RS06095 0.13 +0.9
1,273,806 - AMB_RS06095 0.13 -0.4
1,273,806 - AMB_RS06095 0.13 -0.4
1,273,806 - AMB_RS06095 0.13 -0.7
1,273,984 - AMB_RS06095 0.26 -0.4
1,274,156 + AMB_RS06095 0.39 -0.2
1,274,354 + AMB_RS06095 0.54 -1.3
1,274,355 - AMB_RS06095 0.54 -0.0
1,274,355 - AMB_RS06095 0.54 -0.6
1,274,355 - AMB_RS06095 0.54 +0.4
1,274,378 + AMB_RS06095 0.55 -0.1
1,274,378 + AMB_RS06095 0.55 +0.0
1,274,545 - AMB_RS06095 0.68 +0.1
1,274,545 - AMB_RS06095 0.68 -0.3
1,274,612 + AMB_RS06095 0.73 -0.4
1,274,613 - AMB_RS06095 0.73 -0.2
1,274,615 + AMB_RS06095 0.73 +1.6
1,274,615 + AMB_RS06095 0.73 -0.1
1,274,615 + AMB_RS06095 0.73 -1.0
1,274,615 + AMB_RS06095 0.73 +0.7
1,274,615 + AMB_RS06095 0.73 +2.1
1,274,615 + AMB_RS06095 0.73 -3.4
1,274,615 + AMB_RS06095 0.73 -0.0
1,274,615 + AMB_RS06095 0.73 -1.4
1,274,616 - AMB_RS06095 0.73 -1.6
1,274,616 - AMB_RS06095 0.73 +0.2
1,274,616 - AMB_RS06095 0.73 -0.8
1,274,616 - AMB_RS06095 0.73 +1.0
1,274,616 - AMB_RS06095 0.73 -0.4
1,274,617 + AMB_RS06095 0.73 -0.7
1,274,617 + AMB_RS06095 0.73 -1.9
1,274,617 + AMB_RS06095 0.73 +0.2
1,274,617 + AMB_RS06095 0.73 +0.5
1,274,617 + AMB_RS06095 0.73 -0.0
1,274,617 + AMB_RS06095 0.73 -0.0
1,274,617 + AMB_RS06095 0.73 -0.7
1,274,618 - AMB_RS06095 0.73 -1.1
1,274,618 - AMB_RS06095 0.73 -0.5
1,274,618 - AMB_RS06095 0.73 +0.1
1,274,618 - AMB_RS06095 0.73 +0.6
1,274,618 - AMB_RS06095 0.73 +1.4
1,274,618 - AMB_RS06095 0.73 +0.1
1,274,618 - AMB_RS06095 0.73 +0.1
1,274,618 - AMB_RS06095 0.73 -1.2
1,275,078 - AMB_RS06100 0.26 +0.8
1,275,136 + AMB_RS06100 0.41 +1.1
1,275,137 - AMB_RS06100 0.41 +0.6
1,275,137 - AMB_RS06100 0.41 -1.0
1,275,217 + AMB_RS06100 0.61 -0.2
1,275,217 + AMB_RS06100 0.61 -1.1
1,275,218 - AMB_RS06100 0.62 -0.5
1,275,218 - AMB_RS06100 0.62 -0.0
1,275,232 + AMB_RS06100 0.65 +0.5
1,275,372 + -1.4
1,275,373 - -0.4
1,275,373 - -0.2
1,275,453 + -1.5
1,275,453 + -0.4
1,275,454 - -0.2
1,275,454 - +0.2
1,275,454 - +0.7
1,275,454 - -3.0
1,275,459 + +0.7
1,275,507 + +0.0
1,275,508 - -0.6
1,275,558 + AMB_RS24015 0.11 -0.1
1,275,558 + AMB_RS24015 0.11 +0.2
1,275,558 + AMB_RS24015 0.11 +0.6
1,275,558 + AMB_RS24015 0.11 +0.7
1,275,559 - AMB_RS24015 0.11 +0.7
1,275,615 + AMB_RS24015 0.16 -0.1
1,275,615 + AMB_RS24015 0.16 -0.5
1,275,666 + AMB_RS24015 0.20 +0.5
1,275,817 + AMB_RS24015 0.33 -2.0
1,275,817 + AMB_RS24015 0.33 -0.1
1,275,818 - AMB_RS24015 0.33 -0.2
1,275,818 - AMB_RS24015 0.33 -0.4
1,275,818 - AMB_RS24015 0.33 +0.1
1,275,818 - AMB_RS24015 0.33 -0.6

Or see this region's nucleotide sequence