Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04775 and AMB_RS04780 are separated by 38 nucleotides AMB_RS04780 and AMB_RS04785 are separated by 399 nucleotides AMB_RS04785 and AMB_RS04790 are separated by 178 nucleotides
AMB_RS04775: AMB_RS04775 - integrase, at 994,461 to 995,318
_RS04775
AMB_RS04780: AMB_RS04780 - IS91 family transposase, at 995,357 to 996,529
_RS04780
AMB_RS04785: AMB_RS04785 - IS5/IS1182 family transposase, at 996,929 to 997,303
_RS04785
AMB_RS04790: AMB_RS04790 - hypothetical protein, at 997,482 to 997,673
_RS04790
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 994.490 kb on + strand at 994.491 kb on - strand at 994.491 kb on - strand at 994.491 kb on - strand at 994.542 kb on + strand at 994.542 kb on + strand at 994.543 kb on - strand at 994.543 kb on - strand at 994.543 kb on - strand at 994.647 kb on - strand, within AMB_RS04775 at 994.647 kb on - strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.696 kb on - strand, within AMB_RS04775 at 994.740 kb on + strand, within AMB_RS04775 at 994.740 kb on + strand, within AMB_RS04775 at 994.768 kb on + strand, within AMB_RS04775 at 994.769 kb on - strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.848 kb on + strand, within AMB_RS04775 at 994.849 kb on - strand, within AMB_RS04775 at 994.849 kb on - strand, within AMB_RS04775 at 994.957 kb on - strand, within AMB_RS04775 at 994.957 kb on - strand, within AMB_RS04775 at 994.998 kb on + strand, within AMB_RS04775 at 994.998 kb on + strand, within AMB_RS04775 at 994.998 kb on + strand, within AMB_RS04775 at 994.999 kb on - strand, within AMB_RS04775 at 994.999 kb on - strand, within AMB_RS04775 at 994.999 kb on - strand, within AMB_RS04775 at 995.072 kb on + strand, within AMB_RS04775 at 995.073 kb on - strand, within AMB_RS04775 at 995.144 kb on + strand, within AMB_RS04775 at 995.145 kb on - strand, within AMB_RS04775 at 995.219 kb on - strand, within AMB_RS04775 at 995.219 kb on - strand, within AMB_RS04775 at 995.235 kb on + strand at 995.236 kb on - strand at 995.245 kb on + strand at 995.374 kb on + strand at 995.513 kb on + strand, within AMB_RS04780 at 995.513 kb on + strand, within AMB_RS04780 at 995.514 kb on - strand, within AMB_RS04780 at 995.609 kb on + strand, within AMB_RS04780 at 995.609 kb on + strand, within AMB_RS04780 at 995.610 kb on - strand, within AMB_RS04780 at 995.610 kb on - strand, within AMB_RS04780 at 995.610 kb on - strand, within AMB_RS04780 at 995.610 kb on - strand, within AMB_RS04780 at 995.678 kb on + strand, within AMB_RS04780 at 995.679 kb on - strand, within AMB_RS04780 at 995.679 kb on - strand, within AMB_RS04780 at 995.776 kb on + strand, within AMB_RS04780 at 995.777 kb on - strand, within AMB_RS04780 at 995.777 kb on - strand, within AMB_RS04780 at 995.777 kb on - strand, within AMB_RS04780 at 995.777 kb on - strand, within AMB_RS04780 at 995.777 kb on - strand, within AMB_RS04780 at 995.839 kb on - strand, within AMB_RS04780 at 995.922 kb on + strand, within AMB_RS04780 at 995.923 kb on - strand, within AMB_RS04780 at 995.923 kb on - strand, within AMB_RS04780 at 996.018 kb on - strand, within AMB_RS04780 at 996.048 kb on + strand, within AMB_RS04780 at 996.053 kb on + strand, within AMB_RS04780 at 996.053 kb on + strand, within AMB_RS04780 at 996.054 kb on - strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.096 kb on - strand, within AMB_RS04780 at 996.096 kb on - strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.108 kb on - strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.110 kb on - strand, within AMB_RS04780 at 996.110 kb on - strand, within AMB_RS04780 at 996.185 kb on + strand, within AMB_RS04780 at 996.185 kb on + strand, within AMB_RS04780 at 996.291 kb on - strand, within AMB_RS04780 at 996.395 kb on + strand, within AMB_RS04780 at 996.396 kb on - strand, within AMB_RS04780 at 996.564 kb on + strand at 996.564 kb on + strand at 996.565 kb on - strand at 996.772 kb on + strand at 996.773 kb on - strand at 996.951 kb on + strand at 996.951 kb on + strand at 996.952 kb on - strand at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 994,490 + -0.3 994,491 - -0.8 994,491 - +0.5 994,491 - +1.0 994,542 + -0.5 994,542 + -0.7 994,543 - -0.0 994,543 - -0.2 994,543 - +0.1 994,647 - AMB_RS04775 0.22 +0.5 994,647 - AMB_RS04775 0.22 -0.4 994,695 + AMB_RS04775 0.27 +0.3 994,695 + AMB_RS04775 0.27 +0.6 994,695 + AMB_RS04775 0.27 +0.0 994,696 - AMB_RS04775 0.27 -1.6 994,740 + AMB_RS04775 0.33 -0.1 994,740 + AMB_RS04775 0.33 -0.4 994,768 + AMB_RS04775 0.36 +0.3 994,769 - AMB_RS04775 0.36 -2.2 994,848 + AMB_RS04775 0.45 -1.2 994,848 + AMB_RS04775 0.45 +0.1 994,848 + AMB_RS04775 0.45 +0.1 994,848 + AMB_RS04775 0.45 -1.0 994,848 + AMB_RS04775 0.45 +0.7 994,848 + AMB_RS04775 0.45 -1.0 994,849 - AMB_RS04775 0.45 -0.1 994,849 - AMB_RS04775 0.45 +0.1 994,957 - AMB_RS04775 0.58 +0.4 994,957 - AMB_RS04775 0.58 -0.9 994,998 + AMB_RS04775 0.63 +0.3 994,998 + AMB_RS04775 0.63 +0.2 994,998 + AMB_RS04775 0.63 -0.4 994,999 - AMB_RS04775 0.63 +0.1 994,999 - AMB_RS04775 0.63 -0.1 994,999 - AMB_RS04775 0.63 -0.4 995,072 + AMB_RS04775 0.71 -0.5 995,073 - AMB_RS04775 0.71 -0.2 995,144 + AMB_RS04775 0.80 -2.4 995,145 - AMB_RS04775 0.80 +0.3 995,219 - AMB_RS04775 0.88 +0.0 995,219 - AMB_RS04775 0.88 -1.0 995,235 + -1.7 995,236 - +1.8 995,245 + +0.2 995,374 + -1.0 995,513 + AMB_RS04780 0.13 -0.2 995,513 + AMB_RS04780 0.13 -2.0 995,514 - AMB_RS04780 0.13 +1.3 995,609 + AMB_RS04780 0.21 -1.0 995,609 + AMB_RS04780 0.21 -0.7 995,610 - AMB_RS04780 0.22 -0.8 995,610 - AMB_RS04780 0.22 -1.9 995,610 - AMB_RS04780 0.22 -1.0 995,610 - AMB_RS04780 0.22 +0.6 995,678 + AMB_RS04780 0.27 -0.1 995,679 - AMB_RS04780 0.27 -1.0 995,679 - AMB_RS04780 0.27 -0.3 995,776 + AMB_RS04780 0.36 -1.3 995,777 - AMB_RS04780 0.36 -0.8 995,777 - AMB_RS04780 0.36 -0.4 995,777 - AMB_RS04780 0.36 -0.5 995,777 - AMB_RS04780 0.36 -2.1 995,777 - AMB_RS04780 0.36 +0.2 995,839 - AMB_RS04780 0.41 -3.1 995,922 + AMB_RS04780 0.48 +1.0 995,923 - AMB_RS04780 0.48 +1.6 995,923 - AMB_RS04780 0.48 -0.8 996,018 - AMB_RS04780 0.56 -0.5 996,048 + AMB_RS04780 0.59 +1.8 996,053 + AMB_RS04780 0.59 -0.5 996,053 + AMB_RS04780 0.59 +0.7 996,054 - AMB_RS04780 0.59 +0.0 996,095 + AMB_RS04780 0.63 +1.0 996,095 + AMB_RS04780 0.63 +0.2 996,095 + AMB_RS04780 0.63 -0.1 996,096 - AMB_RS04780 0.63 +0.1 996,096 - AMB_RS04780 0.63 -0.2 996,107 + AMB_RS04780 0.64 -0.8 996,107 + AMB_RS04780 0.64 -1.8 996,107 + AMB_RS04780 0.64 +1.7 996,107 + AMB_RS04780 0.64 +0.2 996,108 - AMB_RS04780 0.64 -0.3 996,109 + AMB_RS04780 0.64 +1.3 996,109 + AMB_RS04780 0.64 +0.4 996,109 + AMB_RS04780 0.64 -1.0 996,110 - AMB_RS04780 0.64 +0.1 996,110 - AMB_RS04780 0.64 +0.8 996,185 + AMB_RS04780 0.71 -1.4 996,185 + AMB_RS04780 0.71 +0.5 996,291 - AMB_RS04780 0.80 -0.8 996,395 + AMB_RS04780 0.88 -0.6 996,396 - AMB_RS04780 0.89 -0.4 996,564 + +0.2 996,564 + -1.2 996,565 - -2.9 996,772 + +0.0 996,773 - +0.6 996,951 + -0.5 996,951 + -0.9 996,952 - -0.4 997,053 + AMB_RS04785 0.33 -2.0 997,053 + AMB_RS04785 0.33 -0.5 997,053 + AMB_RS04785 0.33 -3.0 997,054 - AMB_RS04785 0.33 -0.2 997,054 - AMB_RS04785 0.33 +2.4 997,054 - AMB_RS04785 0.33 +0.1 997,156 - AMB_RS04785 0.61 -1.4 997,156 - AMB_RS04785 0.61 -0.8 997,156 - AMB_RS04785 0.61 +0.2 997,203 - AMB_RS04785 0.73 +0.2 997,203 - AMB_RS04785 0.73 -0.6 997,203 - AMB_RS04785 0.73 -2.7
Or see this region's nucleotide sequence