Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04235 and AMB_RS04240 are separated by 11 nucleotides AMB_RS04240 and AMB_RS04245 are separated by 109 nucleotides AMB_RS04245 and AMB_RS04250 are separated by 106 nucleotides AMB_RS04250 and AMB_RS04255 are separated by 9 nucleotides
AMB_RS04235: AMB_RS04235 - hypothetical protein, at 890,121 to 890,567
_RS04235
AMB_RS04240: AMB_RS04240 - hypothetical protein, at 890,579 to 890,914
_RS04240
AMB_RS04245: AMB_RS04245 - (R)-hydratase, at 891,024 to 891,458
_RS04245
AMB_RS04250: AMB_RS04250 - bifunctional riboflavin kinase/FAD synthetase, at 891,565 to 892,554
_RS04250
AMB_RS04255: AMB_RS04255 - isoleucine--tRNA ligase, at 892,564 to 895,409
_RS04255
Position (kb) 891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 890.601 kb on + strand at 890.602 kb on - strand at 890.602 kb on - strand at 890.602 kb on - strand at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.685 kb on + strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.847 kb on + strand, within AMB_RS04240 at 890.848 kb on - strand, within AMB_RS04240 at 890.848 kb on - strand, within AMB_RS04240 at 890.964 kb on + strand at 890.964 kb on + strand at 890.964 kb on + strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.966 kb on + strand at 890.966 kb on + strand at 890.966 kb on + strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 891.006 kb on + strand at 891.006 kb on + strand at 891.006 kb on + strand at 891.007 kb on - strand at 891.007 kb on - strand at 891.007 kb on - strand at 891.007 kb on - strand at 891.051 kb on + strand at 891.051 kb on + strand at 891.052 kb on - strand at 891.052 kb on - strand at 891.052 kb on - strand at 891.052 kb on - strand at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.276 kb on + strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.277 kb on - strand, within AMB_RS04245 at 891.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 890,601 + -0.1 890,602 - +0.1 890,602 - +0.3 890,602 - -0.8 890,641 - AMB_RS04240 0.18 -1.6 890,641 - AMB_RS04240 0.18 +0.8 890,641 - AMB_RS04240 0.18 -2.7 890,641 - AMB_RS04240 0.18 +0.1 890,685 + AMB_RS04240 0.32 -0.5 890,686 - AMB_RS04240 0.32 -0.2 890,686 - AMB_RS04240 0.32 -0.0 890,686 - AMB_RS04240 0.32 +0.6 890,686 - AMB_RS04240 0.32 -1.7 890,847 + AMB_RS04240 0.80 -1.5 890,848 - AMB_RS04240 0.80 +0.6 890,848 - AMB_RS04240 0.80 -2.1 890,964 + -2.7 890,964 + -0.1 890,964 + -0.5 890,965 - +0.2 890,965 - -0.0 890,965 - -1.2 890,965 - -1.7 890,965 - -1.2 890,965 - -1.2 890,965 - +0.9 890,966 + +1.1 890,966 + +0.3 890,966 + +1.1 890,967 - -1.2 890,967 - -1.4 890,967 - -0.8 890,967 - +0.7 890,967 - -0.4 891,006 + -0.6 891,006 + -0.5 891,006 + -0.1 891,007 - +0.0 891,007 - -2.4 891,007 - -2.9 891,007 - -1.0 891,051 + -2.0 891,051 + +1.6 891,052 - -1.7 891,052 - -2.0 891,052 - -1.3 891,052 - -1.4 891,276 + AMB_RS04245 0.58 -2.6 891,276 + AMB_RS04245 0.58 -2.4 891,276 + AMB_RS04245 0.58 -3.2 891,276 + AMB_RS04245 0.58 -0.2 891,276 + AMB_RS04245 0.58 +0.2 891,276 + AMB_RS04245 0.58 -0.2 891,276 + AMB_RS04245 0.58 -1.7 891,276 + AMB_RS04245 0.58 -0.4 891,276 + AMB_RS04245 0.58 -0.0 891,276 + AMB_RS04245 0.58 +0.0 891,276 + AMB_RS04245 0.58 -1.3 891,276 + AMB_RS04245 0.58 +0.1 891,276 + AMB_RS04245 0.58 -0.9 891,276 + AMB_RS04245 0.58 -0.1 891,276 + AMB_RS04245 0.58 -2.6 891,276 + AMB_RS04245 0.58 -2.9 891,276 + AMB_RS04245 0.58 -3.0 891,276 + AMB_RS04245 0.58 -1.7 891,276 + AMB_RS04245 0.58 -2.4 891,276 + AMB_RS04245 0.58 -0.8 891,276 + AMB_RS04245 0.58 -1.6 891,276 + AMB_RS04245 0.58 -4.0 891,277 - AMB_RS04245 0.58 -1.0 891,277 - AMB_RS04245 0.58 +0.8 891,277 - AMB_RS04245 0.58 +1.3 891,277 - AMB_RS04245 0.58 -2.9 891,277 - AMB_RS04245 0.58 -0.7 891,277 - AMB_RS04245 0.58 +0.6 891,277 - AMB_RS04245 0.58 -0.4 891,277 - AMB_RS04245 0.58 -1.3 891,277 - AMB_RS04245 0.58 -0.1 891,277 - AMB_RS04245 0.58 -0.6 891,277 - AMB_RS04245 0.58 -0.2 891,277 - AMB_RS04245 0.58 -0.3 891,561 + +0.7
Or see this region's nucleotide sequence