Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03685 and AMB_RS03690 overlap by 17 nucleotides AMB_RS03690 and AMB_RS03695 are separated by 90 nucleotides AMB_RS03695 and AMB_RS03700 are separated by 230 nucleotides AMB_RS03700 and AMB_RS03705 are separated by 93 nucleotides
AMB_RS03685: AMB_RS03685 - spore coat polysaccharide biosynthesis protein F, at 777,769 to 778,533
_RS03685
AMB_RS03690: AMB_RS03690 - hypothetical protein, at 778,517 to 779,284
_RS03690
AMB_RS03695: AMB_RS03695 - NADP-dependent malic enzyme, at 779,375 to 781,657
_RS03695
AMB_RS03700: AMB_RS03700 - tRNA-Leu, at 781,888 to 781,974
_RS03700
AMB_RS03705: AMB_RS03705 - lipoate-protein ligase B, at 782,068 to 782,706
_RS03705
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 778.551 kb on + strand at 778.551 kb on + strand at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.681 kb on + strand, within AMB_RS03690 at 778.682 kb on - strand, within AMB_RS03690 at 778.682 kb on - strand, within AMB_RS03690 at 778.903 kb on - strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.105 kb on - strand, within AMB_RS03690 at 779.377 kb on - strand at 779.680 kb on - strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.982 kb on + strand, within AMB_RS03695 at 780.081 kb on + strand, within AMB_RS03695 at 780.081 kb on + strand, within AMB_RS03695 at 780.082 kb on - strand, within AMB_RS03695 at 780.121 kb on - strand, within AMB_RS03695 at 780.321 kb on + strand, within AMB_RS03695 at 780.321 kb on + strand, within AMB_RS03695 at 780.322 kb on - strand, within AMB_RS03695 at 780.322 kb on - strand, within AMB_RS03695 at 780.322 kb on - strand, within AMB_RS03695 at 780.322 kb on - strand, within AMB_RS03695 at 780.414 kb on + strand, within AMB_RS03695 at 780.414 kb on + strand, within AMB_RS03695 at 780.414 kb on + strand, within AMB_RS03695 at 780.415 kb on - strand, within AMB_RS03695 at 780.415 kb on - strand, within AMB_RS03695 at 780.415 kb on - strand, within AMB_RS03695 at 780.528 kb on + strand, within AMB_RS03695 at 780.562 kb on - strand, within AMB_RS03695 at 780.615 kb on + strand, within AMB_RS03695 at 780.616 kb on - strand, within AMB_RS03695 at 780.616 kb on - strand, within AMB_RS03695 at 780.684 kb on + strand, within AMB_RS03695 at 780.684 kb on + strand, within AMB_RS03695 at 780.685 kb on - strand, within AMB_RS03695 at 780.685 kb on - strand, within AMB_RS03695 at 780.685 kb on - strand, within AMB_RS03695 at 780.685 kb on - strand, within AMB_RS03695 at 780.939 kb on + strand, within AMB_RS03695 at 780.939 kb on + strand, within AMB_RS03695 at 780.939 kb on + strand, within AMB_RS03695 at 780.939 kb on + strand, within AMB_RS03695 at 780.939 kb on + strand, within AMB_RS03695 at 780.940 kb on - strand, within AMB_RS03695 at 780.940 kb on - strand, within AMB_RS03695 at 780.940 kb on - strand, within AMB_RS03695 at 780.940 kb on - strand, within AMB_RS03695 at 780.940 kb on - strand, within AMB_RS03695 at 780.951 kb on + strand, within AMB_RS03695 at 780.951 kb on + strand, within AMB_RS03695 at 780.951 kb on + strand, within AMB_RS03695 at 780.952 kb on - strand, within AMB_RS03695 at 780.981 kb on + strand, within AMB_RS03695 at 780.982 kb on - strand, within AMB_RS03695 at 780.982 kb on - strand, within AMB_RS03695 at 781.542 kb on + strand at 781.542 kb on + strand at 781.542 kb on + strand at 781.543 kb on - strand at 781.543 kb on - strand at 781.601 kb on - strand at 781.624 kb on - strand at 781.624 kb on - strand at 781.684 kb on + strand at 781.685 kb on - strand at 781.690 kb on + strand at 781.690 kb on + strand at 781.691 kb on - strand at 781.691 kb on - strand at 781.715 kb on + strand at 781.715 kb on + strand at 781.716 kb on - strand at 781.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 778,551 + -1.0 778,551 + -1.0 778,677 + AMB_RS03690 0.21 -0.2 778,677 + AMB_RS03690 0.21 -0.2 778,677 + AMB_RS03690 0.21 -1.4 778,677 + AMB_RS03690 0.21 +1.9 778,677 + AMB_RS03690 0.21 -0.4 778,678 - AMB_RS03690 0.21 +0.5 778,678 - AMB_RS03690 0.21 +0.5 778,678 - AMB_RS03690 0.21 +0.2 778,678 - AMB_RS03690 0.21 +0.6 778,678 - AMB_RS03690 0.21 -1.4 778,681 + AMB_RS03690 0.21 -2.2 778,682 - AMB_RS03690 0.21 -0.5 778,682 - AMB_RS03690 0.21 -0.3 778,903 - AMB_RS03690 0.50 +0.7 779,064 + AMB_RS03690 0.71 -0.1 779,064 + AMB_RS03690 0.71 -0.4 779,064 + AMB_RS03690 0.71 -2.9 779,065 - AMB_RS03690 0.71 +0.1 779,065 - AMB_RS03690 0.71 -1.4 779,065 - AMB_RS03690 0.71 +0.3 779,065 - AMB_RS03690 0.71 +0.6 779,105 - AMB_RS03690 0.77 -0.4 779,377 - -0.1 779,680 - AMB_RS03695 0.13 +1.3 779,865 + AMB_RS03695 0.21 -1.4 779,865 + AMB_RS03695 0.21 +0.1 779,865 + AMB_RS03695 0.21 +0.6 779,865 + AMB_RS03695 0.21 -0.7 779,865 + AMB_RS03695 0.21 -1.7 779,865 + AMB_RS03695 0.21 -1.0 779,865 + AMB_RS03695 0.21 -2.2 779,866 - AMB_RS03695 0.22 -0.0 779,866 - AMB_RS03695 0.22 -0.8 779,866 - AMB_RS03695 0.22 -1.5 779,866 - AMB_RS03695 0.22 -0.8 779,866 - AMB_RS03695 0.22 -0.4 779,866 - AMB_RS03695 0.22 +1.5 779,866 - AMB_RS03695 0.22 -0.9 779,866 - AMB_RS03695 0.22 +0.2 779,982 + AMB_RS03695 0.27 -3.2 780,081 + AMB_RS03695 0.31 -0.2 780,081 + AMB_RS03695 0.31 -1.7 780,082 - AMB_RS03695 0.31 -0.8 780,121 - AMB_RS03695 0.33 -0.6 780,321 + AMB_RS03695 0.41 +0.8 780,321 + AMB_RS03695 0.41 -0.1 780,322 - AMB_RS03695 0.41 -0.6 780,322 - AMB_RS03695 0.41 -1.1 780,322 - AMB_RS03695 0.41 -0.4 780,322 - AMB_RS03695 0.41 -0.4 780,414 + AMB_RS03695 0.46 +0.1 780,414 + AMB_RS03695 0.46 +0.9 780,414 + AMB_RS03695 0.46 -0.4 780,415 - AMB_RS03695 0.46 -1.4 780,415 - AMB_RS03695 0.46 -1.4 780,415 - AMB_RS03695 0.46 -0.1 780,528 + AMB_RS03695 0.51 +0.4 780,562 - AMB_RS03695 0.52 -0.4 780,615 + AMB_RS03695 0.54 -0.1 780,616 - AMB_RS03695 0.54 -0.3 780,616 - AMB_RS03695 0.54 -0.1 780,684 + AMB_RS03695 0.57 -2.1 780,684 + AMB_RS03695 0.57 +0.5 780,685 - AMB_RS03695 0.57 -1.5 780,685 - AMB_RS03695 0.57 +0.1 780,685 - AMB_RS03695 0.57 -1.3 780,685 - AMB_RS03695 0.57 -1.1 780,939 + AMB_RS03695 0.69 +0.1 780,939 + AMB_RS03695 0.69 +0.6 780,939 + AMB_RS03695 0.69 +0.2 780,939 + AMB_RS03695 0.69 -1.4 780,939 + AMB_RS03695 0.69 -0.3 780,940 - AMB_RS03695 0.69 -0.1 780,940 - AMB_RS03695 0.69 -0.5 780,940 - AMB_RS03695 0.69 -0.1 780,940 - AMB_RS03695 0.69 -0.4 780,940 - AMB_RS03695 0.69 -0.3 780,951 + AMB_RS03695 0.69 +0.0 780,951 + AMB_RS03695 0.69 -2.5 780,951 + AMB_RS03695 0.69 +0.6 780,952 - AMB_RS03695 0.69 +0.6 780,981 + AMB_RS03695 0.70 -0.1 780,982 - AMB_RS03695 0.70 -0.4 780,982 - AMB_RS03695 0.70 +0.5 781,542 + +1.1 781,542 + +0.8 781,542 + -2.3 781,543 - -0.3 781,543 - +0.1 781,601 - +0.0 781,624 - -0.1 781,624 - -0.5 781,684 + +1.8 781,685 - +0.0 781,690 + -2.9 781,690 + -0.0 781,691 - -0.1 781,691 - +0.5 781,715 + -0.3 781,715 + -0.5 781,716 - -1.9 781,821 - -0.6
Or see this region's nucleotide sequence