Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03295 and AMB_RS03300 are separated by 408 nucleotides AMB_RS03300 and AMB_RS03305 are separated by 8 nucleotides
AMB_RS03295: AMB_RS03295 - hypothetical protein, at 690,338 to 690,799
_RS03295
AMB_RS03300: AMB_RS03300 - transposase, at 691,208 to 691,501
_RS03300
AMB_RS03305: AMB_RS03305 - IS3 family transposase, at 691,510 to 692,355
_RS03305
Position (kb) 691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 690.331 kb on + strand at 690.332 kb on - strand at 690.373 kb on + strand at 690.386 kb on + strand, within AMB_RS03295 at 690.386 kb on + strand, within AMB_RS03295 at 690.386 kb on + strand, within AMB_RS03295 at 690.387 kb on - strand, within AMB_RS03295 at 690.387 kb on - strand, within AMB_RS03295 at 690.387 kb on - strand, within AMB_RS03295 at 690.387 kb on - strand, within AMB_RS03295 at 690.387 kb on - strand, within AMB_RS03295 at 690.409 kb on + strand, within AMB_RS03295 at 690.409 kb on + strand, within AMB_RS03295 at 690.417 kb on - strand, within AMB_RS03295 at 690.417 kb on - strand, within AMB_RS03295 at 690.452 kb on + strand, within AMB_RS03295 at 690.452 kb on + strand, within AMB_RS03295 at 690.452 kb on + strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.453 kb on - strand, within AMB_RS03295 at 690.475 kb on + strand, within AMB_RS03295 at 690.476 kb on - strand, within AMB_RS03295 at 690.515 kb on + strand, within AMB_RS03295 at 690.516 kb on - strand, within AMB_RS03295 at 690.557 kb on - strand, within AMB_RS03295 at 690.663 kb on - strand, within AMB_RS03295 at 690.687 kb on + strand, within AMB_RS03295 at 690.771 kb on + strand at 690.771 kb on + strand at 690.784 kb on + strand at 690.784 kb on + strand at 690.785 kb on - strand at 690.864 kb on - strand at 690.880 kb on + strand at 690.936 kb on - strand at 690.940 kb on - strand at 690.958 kb on + strand at 690.959 kb on - strand at 691.025 kb on - strand at 691.025 kb on - strand at 691.057 kb on + strand at 691.057 kb on + strand at 691.058 kb on - strand at 691.121 kb on - strand at 691.134 kb on - strand at 691.134 kb on - strand at 691.165 kb on - strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.427 kb on - strand at 692.427 kb on - strand at 692.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 690,331 + +0.6 690,332 - -1.2 690,373 + -0.4 690,386 + AMB_RS03295 0.10 +0.6 690,386 + AMB_RS03295 0.10 -1.2 690,386 + AMB_RS03295 0.10 -0.9 690,387 - AMB_RS03295 0.11 +0.0 690,387 - AMB_RS03295 0.11 -1.9 690,387 - AMB_RS03295 0.11 -3.2 690,387 - AMB_RS03295 0.11 -2.4 690,387 - AMB_RS03295 0.11 -0.1 690,409 + AMB_RS03295 0.15 +0.5 690,409 + AMB_RS03295 0.15 -1.5 690,417 - AMB_RS03295 0.17 +0.1 690,417 - AMB_RS03295 0.17 +1.4 690,452 + AMB_RS03295 0.25 -0.4 690,452 + AMB_RS03295 0.25 -0.1 690,452 + AMB_RS03295 0.25 -2.0 690,453 - AMB_RS03295 0.25 -0.2 690,453 - AMB_RS03295 0.25 +0.8 690,453 - AMB_RS03295 0.25 -1.8 690,453 - AMB_RS03295 0.25 -0.2 690,453 - AMB_RS03295 0.25 -0.8 690,453 - AMB_RS03295 0.25 -1.0 690,475 + AMB_RS03295 0.30 -0.2 690,476 - AMB_RS03295 0.30 +0.6 690,515 + AMB_RS03295 0.38 +0.5 690,516 - AMB_RS03295 0.39 +0.6 690,557 - AMB_RS03295 0.47 -0.0 690,663 - AMB_RS03295 0.70 -0.5 690,687 + AMB_RS03295 0.76 -0.5 690,771 + -1.9 690,771 + +0.2 690,784 + -0.4 690,784 + -0.4 690,785 - +1.5 690,864 - -1.4 690,880 + +1.0 690,936 - +0.3 690,940 - +1.6 690,958 + -3.0 690,959 - -0.9 691,025 - +0.4 691,025 - -0.9 691,057 + -0.2 691,057 + +0.7 691,058 - -0.4 691,121 - -0.7 691,134 - -0.4 691,134 - -0.5 691,165 - -0.3 692,388 + +0.3 692,388 + +1.6 692,388 + -0.1 692,388 + -0.2 692,388 + -0.8 692,388 + -0.5 692,427 - +2.1 692,427 - +1.2 692,427 - -0.3
Or see this region's nucleotide sequence