Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03210 and AMB_RS03215 are separated by 102 nucleotides AMB_RS03215 and AMB_RS03220 are separated by 19 nucleotides
AMB_RS03210: AMB_RS03210 - DNA polymerase IV, at 669,811 to 670,992
_RS03210
AMB_RS03215: AMB_RS03215 - alpha/beta hydrolase, at 671,095 to 672,141
_RS03215
AMB_RS03220: AMB_RS03220 - two-component sensor histidine kinase, at 672,161 to 674,695
_RS03220
Position (kb) 671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 670.165 kb on + strand, within AMB_RS03210 at 670.165 kb on + strand, within AMB_RS03210 at 670.165 kb on + strand, within AMB_RS03210 at 670.165 kb on + strand, within AMB_RS03210 at 670.166 kb on - strand, within AMB_RS03210 at 670.166 kb on - strand, within AMB_RS03210 at 670.166 kb on - strand, within AMB_RS03210 at 670.166 kb on - strand, within AMB_RS03210 at 670.166 kb on - strand, within AMB_RS03210 at 670.246 kb on + strand, within AMB_RS03210 at 670.246 kb on + strand, within AMB_RS03210 at 670.247 kb on - strand, within AMB_RS03210 at 670.247 kb on - strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.363 kb on + strand, within AMB_RS03210 at 670.364 kb on - strand, within AMB_RS03210 at 670.598 kb on + strand, within AMB_RS03210 at 670.787 kb on + strand, within AMB_RS03210 at 670.788 kb on - strand, within AMB_RS03210 at 670.867 kb on - strand, within AMB_RS03210 at 670.867 kb on - strand, within AMB_RS03210 at 670.991 kb on - strand at 670.991 kb on - strand at 671.096 kb on + strand at 671.097 kb on - strand at 671.141 kb on + strand at 671.142 kb on - strand at 671.142 kb on - strand at 671.202 kb on - strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.601 kb on - strand, within AMB_RS03215 at 671.643 kb on - strand, within AMB_RS03215 at 671.822 kb on + strand, within AMB_RS03215 at 671.823 kb on - strand, within AMB_RS03215 at 671.841 kb on + strand, within AMB_RS03215 at 671.842 kb on - strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.844 kb on - strand, within AMB_RS03215 at 671.844 kb on - strand, within AMB_RS03215 at 671.924 kb on + strand, within AMB_RS03215 at 671.925 kb on - strand, within AMB_RS03215 at 671.972 kb on + strand, within AMB_RS03215 at 671.973 kb on - strand, within AMB_RS03215 at 671.973 kb on - strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.191 kb on + strand at 672.192 kb on - strand at 672.206 kb on - strand at 672.741 kb on + strand, within AMB_RS03220 at 672.742 kb on - strand, within AMB_RS03220 at 672.742 kb on - strand, within AMB_RS03220
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 670,165 + AMB_RS03210 0.30 -0.2 670,165 + AMB_RS03210 0.30 -0.9 670,165 + AMB_RS03210 0.30 +0.7 670,165 + AMB_RS03210 0.30 +0.2 670,166 - AMB_RS03210 0.30 -1.2 670,166 - AMB_RS03210 0.30 -0.9 670,166 - AMB_RS03210 0.30 +1.6 670,166 - AMB_RS03210 0.30 -0.1 670,166 - AMB_RS03210 0.30 -0.3 670,246 + AMB_RS03210 0.37 -0.1 670,246 + AMB_RS03210 0.37 +0.7 670,247 - AMB_RS03210 0.37 -3.7 670,247 - AMB_RS03210 0.37 -0.1 670,363 + AMB_RS03210 0.47 +0.4 670,363 + AMB_RS03210 0.47 +1.8 670,363 + AMB_RS03210 0.47 -0.1 670,363 + AMB_RS03210 0.47 +0.3 670,363 + AMB_RS03210 0.47 +1.6 670,363 + AMB_RS03210 0.47 -0.5 670,364 - AMB_RS03210 0.47 -3.1 670,598 + AMB_RS03210 0.67 +1.2 670,787 + AMB_RS03210 0.83 +0.3 670,788 - AMB_RS03210 0.83 -0.7 670,867 - AMB_RS03210 0.89 -1.9 670,867 - AMB_RS03210 0.89 +0.7 670,991 - +1.0 670,991 - -0.6 671,096 + +0.3 671,097 - -0.3 671,141 + -2.0 671,142 - +0.6 671,142 - +0.3 671,202 - AMB_RS03215 0.10 -2.0 671,287 + AMB_RS03215 0.18 -0.5 671,287 + AMB_RS03215 0.18 -0.7 671,287 + AMB_RS03215 0.18 -0.4 671,601 - AMB_RS03215 0.48 -3.8 671,643 - AMB_RS03215 0.52 -1.0 671,822 + AMB_RS03215 0.69 -1.0 671,823 - AMB_RS03215 0.70 -2.2 671,841 + AMB_RS03215 0.71 -1.6 671,842 - AMB_RS03215 0.71 -1.0 671,843 + AMB_RS03215 0.71 -0.6 671,843 + AMB_RS03215 0.71 +0.6 671,843 + AMB_RS03215 0.71 -0.5 671,843 + AMB_RS03215 0.71 +1.4 671,844 - AMB_RS03215 0.72 +1.7 671,844 - AMB_RS03215 0.72 +0.1 671,924 + AMB_RS03215 0.79 -1.0 671,925 - AMB_RS03215 0.79 +0.7 671,972 + AMB_RS03215 0.84 +1.6 671,973 - AMB_RS03215 0.84 -3.6 671,973 - AMB_RS03215 0.84 -1.0 672,002 + AMB_RS03215 0.87 -1.0 672,002 + AMB_RS03215 0.87 +0.2 672,002 + AMB_RS03215 0.87 -0.6 672,002 + AMB_RS03215 0.87 +0.0 672,002 + AMB_RS03215 0.87 -0.1 672,191 + -2.1 672,192 - -0.2 672,206 - -0.8 672,741 + AMB_RS03220 0.23 -2.0 672,742 - AMB_RS03220 0.23 -0.6 672,742 - AMB_RS03220 0.23 +0.1
Or see this region's nucleotide sequence