Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02900 and AMB_RS02905 are separated by 47 nucleotides AMB_RS02905 and AMB_RS02910 are separated by 7 nucleotides AMB_RS02910 and AMB_RS02915 overlap by 2 nucleotides AMB_RS02915 and AMB_RS02920 overlap by 4 nucleotides
AMB_RS02900: AMB_RS02900 - hypothetical protein, at 608,236 to 608,772
_RS02900
AMB_RS02905: AMB_RS02905 - hypothetical protein, at 608,820 to 609,068
_RS02905
AMB_RS02910: AMB_RS02910 - 4a-hydroxytetrahydrobiopterin dehydratase, at 609,076 to 609,474
_RS02910
AMB_RS02915: AMB_RS02915 - hypothetical protein, at 609,473 to 609,868
_RS02915
AMB_RS02920: AMB_RS02920 - ATP-dependent protease, at 609,865 to 612,321
_RS02920
Position (kb) 609
610 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 608.540 kb on + strand, within AMB_RS02900 at 608.541 kb on - strand, within AMB_RS02900 at 608.663 kb on + strand, within AMB_RS02900 at 608.663 kb on + strand, within AMB_RS02900 at 608.806 kb on - strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.077 kb on + strand at 609.077 kb on + strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.450 kb on - strand at 609.450 kb on - strand at 609.466 kb on + strand at 609.772 kb on + strand, within AMB_RS02915 at 609.772 kb on + strand, within AMB_RS02915 at 609.850 kb on + strand at 609.919 kb on + strand at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.365 kb on + strand, within AMB_RS02920 at 610.691 kb on - strand, within AMB_RS02920 at 610.691 kb on - strand, within AMB_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 608,540 + AMB_RS02900 0.57 -2.2 608,541 - AMB_RS02900 0.57 +1.0 608,663 + AMB_RS02900 0.80 +0.1 608,663 + AMB_RS02900 0.80 +0.3 608,806 - -0.2 609,052 + -0.0 609,053 - -0.1 609,077 + -0.4 609,077 + -0.1 609,078 - -0.6 609,078 - +2.8 609,078 - +1.2 609,450 - -0.3 609,450 - -0.1 609,466 + -0.5 609,772 + AMB_RS02915 0.76 -0.1 609,772 + AMB_RS02915 0.76 -1.5 609,850 + +0.4 609,919 + +0.3 610,165 + AMB_RS02920 0.12 +0.4 610,165 + AMB_RS02920 0.12 -0.1 610,165 + AMB_RS02920 0.12 +0.2 610,165 + AMB_RS02920 0.12 -0.6 610,165 + AMB_RS02920 0.12 -0.2 610,165 + AMB_RS02920 0.12 +0.6 610,165 + AMB_RS02920 0.12 +0.1 610,166 - AMB_RS02920 0.12 -0.6 610,166 - AMB_RS02920 0.12 -2.2 610,166 - AMB_RS02920 0.12 +0.1 610,166 - AMB_RS02920 0.12 -0.3 610,166 - AMB_RS02920 0.12 +0.1 610,166 - AMB_RS02920 0.12 -1.5 610,166 - AMB_RS02920 0.12 -1.7 610,166 - AMB_RS02920 0.12 -0.8 610,365 + AMB_RS02920 0.20 -0.2 610,691 - AMB_RS02920 0.34 -1.6 610,691 - AMB_RS02920 0.34 +0.0
Or see this region's nucleotide sequence