Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02675

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02670 and AMB_RS02675 overlap by 38 nucleotidesAMB_RS02675 and AMB_RS02680 are separated by 66 nucleotidesAMB_RS02680 and AMB_RS02685 are separated by 132 nucleotides AMB_RS02670: AMB_RS02670 - polyhydroxyalkanoate depolymerase, at 555,750 to 556,976 _RS02670 AMB_RS02675: AMB_RS02675 - YcgN family cysteine cluster protein, at 556,939 to 557,421 _RS02675 AMB_RS02680: AMB_RS02680 - hypothetical protein, at 557,488 to 557,856 _RS02680 AMB_RS02685: AMB_RS02685 - glutamate synthase large subunit, at 557,989 to 562,503 _RS02685 Position (kb) 556 557 558Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 555.947 kb on + strand, within AMB_RS02670at 555.947 kb on + strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.491 kb on + strand, within AMB_RS02670at 556.492 kb on - strand, within AMB_RS02670at 556.620 kb on + strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.660 kb on - strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.663 kb on - strand, within AMB_RS02670at 556.841 kb on + strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.893 kb on + strandat 556.894 kb on - strandat 556.932 kb on + strandat 556.933 kb on - strandat 557.116 kb on + strand, within AMB_RS02675at 557.170 kb on + strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.466 kb on - strandat 557.466 kb on - strandat 557.825 kb on + strandat 557.880 kb on + strandat 557.978 kb on + strandat 557.978 kb on + strandat 557.979 kb on - strandat 557.979 kb on - strandat 558.058 kb on + strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.077 kb on - strandat 558.246 kb on - strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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555,947 + AMB_RS02670 0.16 -0.7
555,947 + AMB_RS02670 0.16 -2.7
555,948 - AMB_RS02670 0.16 +0.5
555,948 - AMB_RS02670 0.16 -0.5
556,143 + AMB_RS02670 0.32 +0.7
556,143 + AMB_RS02670 0.32 +0.1
556,143 + AMB_RS02670 0.32 +1.4
556,144 - AMB_RS02670 0.32 +0.3
556,144 - AMB_RS02670 0.32 -0.2
556,144 - AMB_RS02670 0.32 -0.4
556,144 - AMB_RS02670 0.32 +1.3
556,144 - AMB_RS02670 0.32 +0.3
556,209 + AMB_RS02670 0.37 +0.4
556,209 + AMB_RS02670 0.37 +1.8
556,209 + AMB_RS02670 0.37 +0.7
556,209 + AMB_RS02670 0.37 +0.0
556,209 + AMB_RS02670 0.37 +0.4
556,209 + AMB_RS02670 0.37 +0.4
556,467 + AMB_RS02670 0.58 -0.4
556,467 + AMB_RS02670 0.58 -4.0
556,467 + AMB_RS02670 0.58 +0.0
556,467 + AMB_RS02670 0.58 -1.0
556,468 - AMB_RS02670 0.59 +2.7
556,468 - AMB_RS02670 0.59 -2.9
556,468 - AMB_RS02670 0.59 -1.5
556,468 - AMB_RS02670 0.59 -0.3
556,468 - AMB_RS02670 0.59 +0.9
556,491 + AMB_RS02670 0.60 -1.3
556,492 - AMB_RS02670 0.60 +1.2
556,620 + AMB_RS02670 0.71 -0.2
556,621 - AMB_RS02670 0.71 +1.3
556,621 - AMB_RS02670 0.71 +0.1
556,621 - AMB_RS02670 0.71 +0.4
556,621 - AMB_RS02670 0.71 -0.4
556,629 + AMB_RS02670 0.72 -0.3
556,629 + AMB_RS02670 0.72 -3.0
556,629 + AMB_RS02670 0.72 +4.8
556,659 + AMB_RS02670 0.74 -0.5
556,659 + AMB_RS02670 0.74 -1.7
556,660 - AMB_RS02670 0.74 -2.9
556,662 + AMB_RS02670 0.74 -0.3
556,662 + AMB_RS02670 0.74 -3.0
556,662 + AMB_RS02670 0.74 +0.5
556,662 + AMB_RS02670 0.74 +0.2
556,662 + AMB_RS02670 0.74 -0.7
556,663 - AMB_RS02670 0.74 -0.3
556,841 + AMB_RS02670 0.89 -0.5
556,842 - AMB_RS02670 0.89 -0.2
556,842 - AMB_RS02670 0.89 -0.0
556,842 - AMB_RS02670 0.89 -0.3
556,893 + -2.6
556,894 - +0.0
556,932 + -0.4
556,933 - -1.0
557,116 + AMB_RS02675 0.37 -1.9
557,170 + AMB_RS02675 0.48 +1.2
557,171 - AMB_RS02675 0.48 -3.2
557,171 - AMB_RS02675 0.48 +0.6
557,171 - AMB_RS02675 0.48 +0.1
557,171 - AMB_RS02675 0.48 -0.5
557,395 + +0.3
557,395 + -0.4
557,395 + +0.6
557,395 + -0.7
557,395 + -0.0
557,395 + -0.8
557,395 + +0.5
557,396 - -0.0
557,396 - +0.8
557,396 - +0.3
557,396 - -0.5
557,396 - +0.9
557,459 + -1.1
557,459 + +1.6
557,459 + +2.0
557,459 + +1.3
557,466 - -0.8
557,466 - +0.4
557,825 + +1.4
557,880 + -1.2
557,978 + -0.5
557,978 + -0.7
557,979 - -2.0
557,979 - +0.5
558,058 + -2.9
558,059 - -0.2
558,059 - +1.7
558,059 - -2.0
558,077 - -2.6
558,246 - -3.4
558,329 + +0.4
558,329 + -0.4
558,329 + +0.3
558,329 + -1.5
558,330 - +0.6
558,330 - -2.0
558,330 - -0.3
558,330 - +0.8
558,330 - -0.7
558,330 - +0.3

Or see this region's nucleotide sequence