Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02595

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02590 and AMB_RS02595 are separated by 260 nucleotidesAMB_RS02595 and AMB_RS02600 are separated by 22 nucleotidesAMB_RS02600 and AMB_RS02605 are separated by 11 nucleotides AMB_RS02590: AMB_RS02590 - flagellar M-ring protein FliF, at 537,136 to 538,797 _RS02590 AMB_RS02595: AMB_RS02595 - flagellar hook protein FlgE, at 539,058 to 541,589 _RS02595 AMB_RS02600: AMB_RS02600 - flagellar hook capping protein, at 541,612 to 542,436 _RS02600 AMB_RS02605: AMB_RS02605 - flagellar hook-length control protein FliK, at 542,448 to 544,211 _RS02605 Position (kb) 539 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 538.130 kb on + strand, within AMB_RS02590at 538.131 kb on - strand, within AMB_RS02590at 538.131 kb on - strand, within AMB_RS02590at 538.595 kb on + strand, within AMB_RS02590at 538.662 kb on - strandat 538.662 kb on - strandat 538.662 kb on - strandat 538.662 kb on - strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.704 kb on - strandat 538.704 kb on - strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.875 kb on - strandat 538.875 kb on - strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.938 kb on - strandat 539.245 kb on + strandat 539.245 kb on + strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.440 kb on + strand, within AMB_RS02595at 539.440 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.453 kb on - strand, within AMB_RS02595at 539.453 kb on - strand, within AMB_RS02595at 539.456 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.666 kb on - strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.960 kb on + strand, within AMB_RS02595at 539.961 kb on - strand, within AMB_RS02595at 539.961 kb on - strand, within AMB_RS02595at 540.025 kb on + strand, within AMB_RS02595at 540.025 kb on + strand, within AMB_RS02595at 540.026 kb on - strand, within AMB_RS02595at 540.026 kb on - strand, within AMB_RS02595at 540.026 kb on - strand, within AMB_RS02595at 540.040 kb on + strand, within AMB_RS02595at 540.134 kb on - strand, within AMB_RS02595at 540.134 kb on - strand, within AMB_RS02595at 540.238 kb on + strand, within AMB_RS02595at 540.238 kb on + strand, within AMB_RS02595at 540.238 kb on + strand, within AMB_RS02595at 540.239 kb on - strand, within AMB_RS02595at 540.239 kb on - strand, within AMB_RS02595at 540.239 kb on - strand, within AMB_RS02595at 540.256 kb on + strand, within AMB_RS02595at 540.256 kb on + strand, within AMB_RS02595at 540.256 kb on + strand, within AMB_RS02595at 540.257 kb on - strand, within AMB_RS02595at 540.257 kb on - strand, within AMB_RS02595at 540.257 kb on - strand, within AMB_RS02595at 540.289 kb on + strand, within AMB_RS02595at 540.289 kb on + strand, within AMB_RS02595at 540.290 kb on - strand, within AMB_RS02595at 540.290 kb on - strand, within AMB_RS02595at 540.290 kb on - strand, within AMB_RS02595at 540.290 kb on - strand, within AMB_RS02595at 540.290 kb on - strand, within AMB_RS02595at 540.292 kb on + strand, within AMB_RS02595at 540.293 kb on - strand, within AMB_RS02595at 540.299 kb on + strand, within AMB_RS02595at 540.300 kb on - strand, within AMB_RS02595at 540.337 kb on + strand, within AMB_RS02595at 540.337 kb on + strand, within AMB_RS02595at 540.338 kb on - strand, within AMB_RS02595at 540.338 kb on - strand, within AMB_RS02595at 540.367 kb on + strand, within AMB_RS02595at 540.367 kb on + strand, within AMB_RS02595at 540.437 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.439 kb on + strand, within AMB_RS02595at 540.440 kb on - strand, within AMB_RS02595at 540.440 kb on - strand, within AMB_RS02595at 540.488 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.529 kb on + strand, within AMB_RS02595at 540.530 kb on - strand, within AMB_RS02595at 540.530 kb on - strand, within AMB_RS02595at 540.673 kb on + strand, within AMB_RS02595at 540.673 kb on + strand, within AMB_RS02595at 540.673 kb on + strand, within AMB_RS02595at 540.674 kb on - strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.749 kb on - strand, within AMB_RS02595at 540.749 kb on - strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.898 kb on + strand, within AMB_RS02595at 540.899 kb on - strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.105 kb on + strand, within AMB_RS02595at 541.105 kb on + strand, within AMB_RS02595at 541.106 kb on - strand, within AMB_RS02595at 541.106 kb on - strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.118 kb on - strand, within AMB_RS02595at 541.118 kb on - strand, within AMB_RS02595at 541.198 kb on + strand, within AMB_RS02595at 541.198 kb on + strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.222 kb on + strand, within AMB_RS02595at 541.222 kb on + strand, within AMB_RS02595at 541.424 kb on - strandat 541.483 kb on + strandat 541.483 kb on + strandat 541.484 kb on - strandat 541.484 kb on - strandat 541.579 kb on + strandat 541.647 kb on + strandat 541.647 kb on + strandat 541.647 kb on + strandat 541.770 kb on + strand, within AMB_RS02600at 541.932 kb on - strand, within AMB_RS02600at 541.932 kb on - strand, within AMB_RS02600at 541.986 kb on + strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.156 kb on + strand, within AMB_RS02600at 542.156 kb on + strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.341 kb on - strand, within AMB_RS02600at 542.450 kb on - strandat 542.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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538,130 + AMB_RS02590 0.60 +0.6
538,131 - AMB_RS02590 0.60 +0.4
538,131 - AMB_RS02590 0.60 -0.7
538,595 + AMB_RS02590 0.88 +0.0
538,662 - +0.8
538,662 - -1.8
538,662 - -0.8
538,662 - +0.3
538,703 + -1.2
538,703 + -0.1
538,703 + -0.8
538,703 + -0.4
538,704 - -0.8
538,704 - +0.1
538,874 + +0.3
538,874 + -0.4
538,874 + -0.8
538,874 + +0.2
538,874 + -0.8
538,874 + +0.2
538,875 - +0.4
538,875 - -1.6
538,937 + -1.1
538,937 + -3.4
538,937 + +3.3
538,937 + -1.5
538,937 + -0.8
538,938 - -1.7
539,245 + +1.0
539,245 + +0.5
539,246 - -0.1
539,246 - -0.2
539,246 - +0.7
539,246 - -1.0
539,246 - +0.0
539,440 + AMB_RS02595 0.15 -0.3
539,440 + AMB_RS02595 0.15 -0.3
539,452 + AMB_RS02595 0.16 -0.2
539,452 + AMB_RS02595 0.16 +0.8
539,452 + AMB_RS02595 0.16 +1.9
539,452 + AMB_RS02595 0.16 -1.4
539,453 - AMB_RS02595 0.16 +0.8
539,453 - AMB_RS02595 0.16 +0.3
539,456 + AMB_RS02595 0.16 -0.1
539,665 + AMB_RS02595 0.24 -0.8
539,665 + AMB_RS02595 0.24 -2.9
539,665 + AMB_RS02595 0.24 +0.2
539,666 - AMB_RS02595 0.24 +0.7
539,960 + AMB_RS02595 0.36 -0.5
539,960 + AMB_RS02595 0.36 -1.3
539,960 + AMB_RS02595 0.36 +0.1
539,960 + AMB_RS02595 0.36 -0.3
539,960 + AMB_RS02595 0.36 -0.3
539,960 + AMB_RS02595 0.36 +1.8
539,961 - AMB_RS02595 0.36 -0.7
539,961 - AMB_RS02595 0.36 +0.3
540,025 + AMB_RS02595 0.38 -0.4
540,025 + AMB_RS02595 0.38 +0.6
540,026 - AMB_RS02595 0.38 -0.7
540,026 - AMB_RS02595 0.38 +3.0
540,026 - AMB_RS02595 0.38 -3.6
540,040 + AMB_RS02595 0.39 +0.3
540,134 - AMB_RS02595 0.42 -1.3
540,134 - AMB_RS02595 0.42 +4.3
540,238 + AMB_RS02595 0.47 +0.6
540,238 + AMB_RS02595 0.47 -1.0
540,238 + AMB_RS02595 0.47 -2.1
540,239 - AMB_RS02595 0.47 +0.5
540,239 - AMB_RS02595 0.47 +1.2
540,239 - AMB_RS02595 0.47 +0.1
540,256 + AMB_RS02595 0.47 -0.4
540,256 + AMB_RS02595 0.47 -0.4
540,256 + AMB_RS02595 0.47 -0.4
540,257 - AMB_RS02595 0.47 +0.5
540,257 - AMB_RS02595 0.47 -0.2
540,257 - AMB_RS02595 0.47 +0.1
540,289 + AMB_RS02595 0.49 -0.1
540,289 + AMB_RS02595 0.49 -2.2
540,290 - AMB_RS02595 0.49 -0.7
540,290 - AMB_RS02595 0.49 +1.0
540,290 - AMB_RS02595 0.49 +0.5
540,290 - AMB_RS02595 0.49 -2.0
540,290 - AMB_RS02595 0.49 +0.2
540,292 + AMB_RS02595 0.49 +0.2
540,293 - AMB_RS02595 0.49 +0.2
540,299 + AMB_RS02595 0.49 -0.4
540,300 - AMB_RS02595 0.49 +0.1
540,337 + AMB_RS02595 0.51 -1.3
540,337 + AMB_RS02595 0.51 -0.0
540,338 - AMB_RS02595 0.51 +0.2
540,338 - AMB_RS02595 0.51 -2.0
540,367 + AMB_RS02595 0.52 -0.4
540,367 + AMB_RS02595 0.52 +0.7
540,437 + AMB_RS02595 0.54 +0.2
540,439 + AMB_RS02595 0.55 -0.6
540,439 + AMB_RS02595 0.55 -1.1
540,439 + AMB_RS02595 0.55 -0.8
540,439 + AMB_RS02595 0.55 -3.6
540,439 + AMB_RS02595 0.55 -2.2
540,439 + AMB_RS02595 0.55 -1.0
540,440 - AMB_RS02595 0.55 -0.4
540,440 - AMB_RS02595 0.55 -0.1
540,488 + AMB_RS02595 0.56 -0.3
540,529 + AMB_RS02595 0.58 +0.8
540,529 + AMB_RS02595 0.58 -0.5
540,529 + AMB_RS02595 0.58 -1.0
540,529 + AMB_RS02595 0.58 -0.6
540,529 + AMB_RS02595 0.58 -0.2
540,529 + AMB_RS02595 0.58 -0.6
540,530 - AMB_RS02595 0.58 -0.4
540,530 - AMB_RS02595 0.58 -0.5
540,673 + AMB_RS02595 0.64 -1.4
540,673 + AMB_RS02595 0.64 +0.6
540,673 + AMB_RS02595 0.64 -0.2
540,674 - AMB_RS02595 0.64 -0.1
540,748 + AMB_RS02595 0.67 -0.1
540,748 + AMB_RS02595 0.67 -0.2
540,748 + AMB_RS02595 0.67 -0.5
540,748 + AMB_RS02595 0.67 -0.1
540,748 + AMB_RS02595 0.67 -0.8
540,749 - AMB_RS02595 0.67 +0.3
540,749 - AMB_RS02595 0.67 +0.4
540,750 + AMB_RS02595 0.67 -0.7
540,750 + AMB_RS02595 0.67 +0.3
540,750 + AMB_RS02595 0.67 +2.7
540,751 - AMB_RS02595 0.67 -3.2
540,751 - AMB_RS02595 0.67 -0.0
540,751 - AMB_RS02595 0.67 +0.1
540,809 - AMB_RS02595 0.69 -0.0
540,809 - AMB_RS02595 0.69 +0.2
540,809 - AMB_RS02595 0.69 +0.9
540,898 + AMB_RS02595 0.73 +0.7
540,899 - AMB_RS02595 0.73 +0.5
540,952 + AMB_RS02595 0.75 -0.8
540,952 + AMB_RS02595 0.75 +0.4
540,952 + AMB_RS02595 0.75 +0.0
540,952 + AMB_RS02595 0.75 -2.9
540,952 + AMB_RS02595 0.75 -0.1
540,952 + AMB_RS02595 0.75 -2.9
540,953 - AMB_RS02595 0.75 +0.3
540,953 - AMB_RS02595 0.75 +0.2
540,953 - AMB_RS02595 0.75 -0.8
540,953 - AMB_RS02595 0.75 -0.9
541,078 + AMB_RS02595 0.80 +1.4
541,078 + AMB_RS02595 0.80 -0.9
541,078 + AMB_RS02595 0.80 -0.6
541,105 + AMB_RS02595 0.81 -0.8
541,105 + AMB_RS02595 0.81 -0.1
541,106 - AMB_RS02595 0.81 -0.4
541,106 - AMB_RS02595 0.81 -0.3
541,117 + AMB_RS02595 0.81 -1.4
541,117 + AMB_RS02595 0.81 +0.6
541,117 + AMB_RS02595 0.81 -0.6
541,117 + AMB_RS02595 0.81 +0.3
541,117 + AMB_RS02595 0.81 -0.2
541,118 - AMB_RS02595 0.81 -2.9
541,118 - AMB_RS02595 0.81 +0.2
541,198 + AMB_RS02595 0.85 -1.6
541,198 + AMB_RS02595 0.85 +0.0
541,199 - AMB_RS02595 0.85 +1.1
541,199 - AMB_RS02595 0.85 +1.0
541,199 - AMB_RS02595 0.85 +0.0
541,199 - AMB_RS02595 0.85 +0.0
541,199 - AMB_RS02595 0.85 -0.4
541,222 + AMB_RS02595 0.85 -0.3
541,222 + AMB_RS02595 0.85 +1.9
541,424 - -2.2
541,483 + -2.4
541,483 + -1.0
541,484 - +0.4
541,484 - -0.0
541,579 + -0.1
541,647 + -0.8
541,647 + -0.6
541,647 + +0.0
541,770 + AMB_RS02600 0.19 +0.7
541,932 - AMB_RS02600 0.39 -0.7
541,932 - AMB_RS02600 0.39 -0.2
541,986 + AMB_RS02600 0.45 -1.1
541,987 - AMB_RS02600 0.45 -0.6
541,987 - AMB_RS02600 0.45 +0.7
541,987 - AMB_RS02600 0.45 -0.7
542,087 + AMB_RS02600 0.58 -0.2
542,087 + AMB_RS02600 0.58 +0.4
542,087 + AMB_RS02600 0.58 -0.8
542,087 + AMB_RS02600 0.58 -0.3
542,088 - AMB_RS02600 0.58 +0.6
542,088 - AMB_RS02600 0.58 +1.0
542,088 - AMB_RS02600 0.58 -0.8
542,088 - AMB_RS02600 0.58 -0.7
542,156 + AMB_RS02600 0.66 -2.3
542,156 + AMB_RS02600 0.66 -0.6
542,157 - AMB_RS02600 0.66 -0.2
542,157 - AMB_RS02600 0.66 -0.4
542,157 - AMB_RS02600 0.66 +0.0
542,341 - AMB_RS02600 0.88 -0.2
542,450 - -0.6
542,450 - +0.5

Or see this region's nucleotide sequence