Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02470

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02460 and AMB_RS02465 are separated by 8 nucleotidesAMB_RS02465 and AMB_RS02470 are separated by 3 nucleotidesAMB_RS02470 and AMB_RS02475 are separated by 550 nucleotides AMB_RS02460: AMB_RS02460 - hypothetical protein, at 510,345 to 511,115 _RS02460 AMB_RS02465: AMB_RS02465 - hypothetical protein, at 511,124 to 511,480 _RS02465 AMB_RS02470: AMB_RS02470 - DNA methyltransferase, at 511,484 to 512,650 _RS02470 AMB_RS02475: AMB_RS02475 - XRE family transcriptional regulator, at 513,201 to 513,419 _RS02475 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1at 510.562 kb on - strand, within AMB_RS02460at 510.562 kb on - strand, within AMB_RS02460at 510.562 kb on - strand, within AMB_RS02460at 510.564 kb on + strand, within AMB_RS02460at 510.564 kb on + strand, within AMB_RS02460at 510.565 kb on - strand, within AMB_RS02460at 510.565 kb on - strand, within AMB_RS02460at 510.565 kb on - strand, within AMB_RS02460at 510.565 kb on - strand, within AMB_RS02460at 510.565 kb on - strand, within AMB_RS02460at 510.659 kb on + strand, within AMB_RS02460at 510.687 kb on - strand, within AMB_RS02460at 510.716 kb on + strand, within AMB_RS02460at 510.717 kb on - strand, within AMB_RS02460at 510.717 kb on - strand, within AMB_RS02460at 510.717 kb on - strand, within AMB_RS02460at 510.990 kb on + strand, within AMB_RS02460at 510.991 kb on - strand, within AMB_RS02460at 510.991 kb on - strand, within AMB_RS02460at 510.991 kb on - strand, within AMB_RS02460at 511.166 kb on + strand, within AMB_RS02465at 511.166 kb on + strand, within AMB_RS02465at 511.226 kb on + strand, within AMB_RS02465at 511.226 kb on + strand, within AMB_RS02465at 511.226 kb on + strand, within AMB_RS02465at 511.226 kb on + strand, within AMB_RS02465at 511.227 kb on - strand, within AMB_RS02465at 511.227 kb on - strand, within AMB_RS02465at 511.227 kb on - strand, within AMB_RS02465at 511.227 kb on - strand, within AMB_RS02465at 511.227 kb on - strand, within AMB_RS02465at 511.304 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.385 kb on + strand, within AMB_RS02465at 511.386 kb on - strand, within AMB_RS02465at 511.386 kb on - strand, within AMB_RS02465at 511.386 kb on - strand, within AMB_RS02465at 511.427 kb on + strand, within AMB_RS02465at 511.427 kb on + strand, within AMB_RS02465at 511.427 kb on + strand, within AMB_RS02465at 511.427 kb on + strand, within AMB_RS02465at 511.428 kb on - strand, within AMB_RS02465at 511.428 kb on - strand, within AMB_RS02465at 511.428 kb on - strand, within AMB_RS02465at 511.428 kb on - strand, within AMB_RS02465at 511.431 kb on + strand, within AMB_RS02465at 511.431 kb on + strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.432 kb on - strand, within AMB_RS02465at 511.435 kb on + strand, within AMB_RS02465at 511.435 kb on + strand, within AMB_RS02465at 511.436 kb on - strand, within AMB_RS02465at 511.436 kb on - strand, within AMB_RS02465at 511.436 kb on - strand, within AMB_RS02465at 511.436 kb on - strand, within AMB_RS02465at 511.461 kb on - strandat 511.461 kb on - strandat 511.461 kb on - strandat 511.576 kb on + strandat 511.576 kb on + strandat 511.763 kb on + strand, within AMB_RS02470at 511.764 kb on - strand, within AMB_RS02470at 511.880 kb on + strand, within AMB_RS02470at 511.881 kb on - strand, within AMB_RS02470at 511.949 kb on + strand, within AMB_RS02470at 511.950 kb on - strand, within AMB_RS02470at 512.189 kb on + strand, within AMB_RS02470at 512.189 kb on + strand, within AMB_RS02470at 512.190 kb on - strand, within AMB_RS02470at 512.387 kb on + strand, within AMB_RS02470at 512.388 kb on - strand, within AMB_RS02470at 512.388 kb on - strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.423 kb on + strand, within AMB_RS02470at 512.573 kb on + strandat 512.573 kb on + strandat 512.573 kb on + strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.575 kb on + strandat 512.575 kb on + strandat 512.576 kb on - strandat 512.576 kb on - strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.715 kb on + strandat 512.716 kb on - strandat 512.716 kb on - strandat 512.791 kb on - strandat 512.830 kb on - strandat 512.902 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 513.059 kb on + strandat 513.059 kb on + strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.090 kb on + strandat 513.090 kb on + strandat 513.091 kb on - strandat 513.091 kb on - strandat 513.108 kb on + strandat 513.109 kb on - strandat 513.109 kb on - strandat 513.146 kb on + strandat 513.290 kb on - strand, within AMB_RS02475at 513.290 kb on - strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.402 kb on + strandat 513.402 kb on + strandat 513.403 kb on - strandat 513.403 kb on - strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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510,562 - AMB_RS02460 0.28 -0.9
510,562 - AMB_RS02460 0.28 -0.5
510,562 - AMB_RS02460 0.28 +1.1
510,564 + AMB_RS02460 0.28 -0.3
510,564 + AMB_RS02460 0.28 -0.0
510,565 - AMB_RS02460 0.29 -0.1
510,565 - AMB_RS02460 0.29 -1.4
510,565 - AMB_RS02460 0.29 +0.4
510,565 - AMB_RS02460 0.29 -1.1
510,565 - AMB_RS02460 0.29 -0.5
510,659 + AMB_RS02460 0.41 -1.3
510,687 - AMB_RS02460 0.44 -0.1
510,716 + AMB_RS02460 0.48 -0.5
510,717 - AMB_RS02460 0.48 +0.2
510,717 - AMB_RS02460 0.48 +0.8
510,717 - AMB_RS02460 0.48 -3.6
510,990 + AMB_RS02460 0.84 -1.0
510,991 - AMB_RS02460 0.84 -0.3
510,991 - AMB_RS02460 0.84 +0.6
510,991 - AMB_RS02460 0.84 -0.6
511,166 + AMB_RS02465 0.12 +0.5
511,166 + AMB_RS02465 0.12 -0.5
511,226 + AMB_RS02465 0.29 +1.2
511,226 + AMB_RS02465 0.29 +0.7
511,226 + AMB_RS02465 0.29 +0.2
511,226 + AMB_RS02465 0.29 +0.2
511,227 - AMB_RS02465 0.29 -1.7
511,227 - AMB_RS02465 0.29 -0.9
511,227 - AMB_RS02465 0.29 +0.6
511,227 - AMB_RS02465 0.29 -1.6
511,227 - AMB_RS02465 0.29 -0.4
511,304 + AMB_RS02465 0.50 -0.1
511,385 + AMB_RS02465 0.73 -3.3
511,385 + AMB_RS02465 0.73 +1.5
511,385 + AMB_RS02465 0.73 +0.3
511,385 + AMB_RS02465 0.73 -1.9
511,385 + AMB_RS02465 0.73 +0.7
511,385 + AMB_RS02465 0.73 +1.3
511,386 - AMB_RS02465 0.73 -0.0
511,386 - AMB_RS02465 0.73 -0.0
511,386 - AMB_RS02465 0.73 +0.5
511,427 + AMB_RS02465 0.85 +0.1
511,427 + AMB_RS02465 0.85 +0.2
511,427 + AMB_RS02465 0.85 -1.5
511,427 + AMB_RS02465 0.85 -1.0
511,428 - AMB_RS02465 0.85 -2.4
511,428 - AMB_RS02465 0.85 +0.2
511,428 - AMB_RS02465 0.85 -0.4
511,428 - AMB_RS02465 0.85 -0.5
511,431 + AMB_RS02465 0.86 -0.3
511,431 + AMB_RS02465 0.86 -0.1
511,432 - AMB_RS02465 0.86 -0.4
511,432 - AMB_RS02465 0.86 -2.1
511,432 - AMB_RS02465 0.86 +0.6
511,432 - AMB_RS02465 0.86 +0.6
511,432 - AMB_RS02465 0.86 -0.3
511,432 - AMB_RS02465 0.86 -0.5
511,432 - AMB_RS02465 0.86 -0.1
511,432 - AMB_RS02465 0.86 +0.4
511,432 - AMB_RS02465 0.86 -0.4
511,432 - AMB_RS02465 0.86 -1.7
511,432 - AMB_RS02465 0.86 -0.0
511,435 + AMB_RS02465 0.87 +0.4
511,435 + AMB_RS02465 0.87 -0.7
511,436 - AMB_RS02465 0.87 -0.0
511,436 - AMB_RS02465 0.87 +0.4
511,436 - AMB_RS02465 0.87 -1.4
511,436 - AMB_RS02465 0.87 -0.1
511,461 - -0.7
511,461 - -2.7
511,461 - -0.5
511,576 + -1.2
511,576 + -0.1
511,763 + AMB_RS02470 0.24 +0.4
511,764 - AMB_RS02470 0.24 +0.5
511,880 + AMB_RS02470 0.34 +0.5
511,881 - AMB_RS02470 0.34 -0.1
511,949 + AMB_RS02470 0.40 -2.7
511,950 - AMB_RS02470 0.40 -0.3
512,189 + AMB_RS02470 0.60 -0.3
512,189 + AMB_RS02470 0.60 -0.7
512,190 - AMB_RS02470 0.60 +1.0
512,387 + AMB_RS02470 0.77 +1.5
512,388 - AMB_RS02470 0.77 +0.5
512,388 - AMB_RS02470 0.77 +0.3
512,420 + AMB_RS02470 0.80 -0.5
512,420 + AMB_RS02470 0.80 +0.6
512,420 + AMB_RS02470 0.80 -0.4
512,420 + AMB_RS02470 0.80 -0.9
512,420 + AMB_RS02470 0.80 -0.5
512,421 - AMB_RS02470 0.80 +0.3
512,421 - AMB_RS02470 0.80 +0.4
512,421 - AMB_RS02470 0.80 +0.2
512,423 + AMB_RS02470 0.80 -1.1
512,573 + -0.7
512,573 + -0.3
512,573 + +0.0
512,574 - -0.0
512,574 - -1.0
512,574 - -0.4
512,574 - -0.7
512,575 + -0.6
512,575 + -0.2
512,576 - -1.0
512,576 - -0.0
512,674 + +0.1
512,674 + +0.8
512,674 + -0.9
512,674 + +0.6
512,674 + -0.4
512,674 + -0.4
512,674 + -0.5
512,674 + -3.5
512,674 + -0.3
512,675 - +0.6
512,675 - +0.6
512,675 - -0.4
512,675 - +0.3
512,715 + -1.2
512,716 - -1.0
512,716 - +0.3
512,791 - -0.1
512,830 - -1.3
512,902 + +0.2
512,954 + -2.4
512,954 + +0.6
512,954 + -1.0
513,059 + -1.5
513,059 + +0.3
513,060 - +0.4
513,060 - +0.2
513,060 - -1.0
513,060 - +0.7
513,060 - +1.7
513,090 + -2.7
513,090 + -0.2
513,091 - -0.7
513,091 - -0.5
513,108 + +0.1
513,109 - -0.6
513,109 - -1.9
513,146 + -2.7
513,290 - AMB_RS02475 0.41 -1.7
513,290 - AMB_RS02475 0.41 -0.4
513,312 + AMB_RS02475 0.51 -2.6
513,312 + AMB_RS02475 0.51 +0.4
513,313 - AMB_RS02475 0.51 -0.0
513,313 - AMB_RS02475 0.51 -0.8
513,316 + AMB_RS02475 0.53 +1.0
513,316 + AMB_RS02475 0.53 -0.4
513,317 - AMB_RS02475 0.53 -2.6
513,317 - AMB_RS02475 0.53 -0.6
513,402 + -1.0
513,402 + -0.8
513,403 - +0.3
513,403 - -1.0
513,547 + -0.4
513,547 + -0.2
513,547 + -0.9
513,548 - +0.2

Or see this region's nucleotide sequence