Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02090

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02075 and AMB_RS02080 overlap by 4 nucleotidesAMB_RS02080 and AMB_RS02085 are separated by 262 nucleotidesAMB_RS02085 and AMB_RS02090 are separated by 43 nucleotidesAMB_RS02090 and AMB_RS02095 are separated by 15 nucleotidesAMB_RS02095 and AMB_RS02100 are separated by 145 nucleotides AMB_RS02075: AMB_RS02075 - IS66 family insertion sequence hypothetical protein, at 437,227 to 437,574 _RS02075 AMB_RS02080: AMB_RS02080 - IS66 family insertion sequence hypothetical protein, at 437,571 to 437,945 _RS02080 AMB_RS02085: AMB_RS02085 - hypothetical protein, at 438,208 to 438,459 _RS02085 AMB_RS02090: AMB_RS02090 - DDE transposase, at 438,503 to 438,945 _RS02090 AMB_RS02095: AMB_RS02095 - IS630 family transposase, at 438,961 to 439,396 _RS02095 AMB_RS02100: AMB_RS02100 - transposase, at 439,542 to 439,703 _RS02100 Position (kb) 438 439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 438.005 kb on + strandat 438.005 kb on + strandat 438.136 kb on + strandat 438.137 kb on - strandat 438.137 kb on - strandat 438.313 kb on - strand, within AMB_RS02085at 438.313 kb on - strand, within AMB_RS02085at 438.326 kb on - strand, within AMB_RS02085at 438.326 kb on - strand, within AMB_RS02085at 438.370 kb on + strand, within AMB_RS02085at 438.371 kb on - strand, within AMB_RS02085at 438.433 kb on + strand, within AMB_RS02085at 438.618 kb on + strand, within AMB_RS02090at 438.619 kb on - strand, within AMB_RS02090at 438.687 kb on + strand, within AMB_RS02090at 438.721 kb on + strand, within AMB_RS02090at 438.722 kb on - strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.770 kb on + strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.771 kb on - strand, within AMB_RS02090at 438.796 kb on - strand, within AMB_RS02090at 438.943 kb on + strandat 438.943 kb on + strandat 438.943 kb on + strandat 438.944 kb on - strandat 438.944 kb on - strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.945 kb on + strandat 438.946 kb on - strandat 438.946 kb on - strandat 438.969 kb on + strandat 438.969 kb on + strandat 439.056 kb on + strand, within AMB_RS02095at 439.056 kb on + strand, within AMB_RS02095at 439.057 kb on - strand, within AMB_RS02095at 439.057 kb on - strand, within AMB_RS02095at 439.057 kb on - strand, within AMB_RS02095at 439.065 kb on - strand, within AMB_RS02095at 439.065 kb on - strand, within AMB_RS02095at 439.065 kb on - strand, within AMB_RS02095at 439.096 kb on - strand, within AMB_RS02095at 439.096 kb on - strand, within AMB_RS02095at 439.289 kb on - strand, within AMB_RS02095at 439.289 kb on - strand, within AMB_RS02095at 439.362 kb on + strandat 439.362 kb on + strandat 439.363 kb on - strandat 439.411 kb on - strandat 439.411 kb on - strandat 439.411 kb on - strandat 439.411 kb on - strandat 439.411 kb on - strandat 439.411 kb on - strandat 439.671 kb on + strand, within AMB_RS02100at 439.671 kb on + strand, within AMB_RS02100at 439.671 kb on + strand, within AMB_RS02100at 439.671 kb on + strand, within AMB_RS02100at 439.672 kb on - strand, within AMB_RS02100at 439.725 kb on - strandat 439.725 kb on - strandat 439.733 kb on + strandat 439.733 kb on + strandat 439.733 kb on + strandat 439.733 kb on + strandat 439.733 kb on + strandat 439.733 kb on + strandat 439.734 kb on - strandat 439.734 kb on - strandat 439.741 kb on - strandat 439.741 kb on - strandat 439.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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438,005 + -0.4
438,005 + +0.9
438,136 + -0.6
438,137 - +0.1
438,137 - -0.3
438,313 - AMB_RS02085 0.42 -1.0
438,313 - AMB_RS02085 0.42 -1.1
438,326 - AMB_RS02085 0.47 +0.3
438,326 - AMB_RS02085 0.47 +0.5
438,370 + AMB_RS02085 0.64 -3.0
438,371 - AMB_RS02085 0.65 -0.8
438,433 + AMB_RS02085 0.89 +1.0
438,618 + AMB_RS02090 0.26 +0.6
438,619 - AMB_RS02090 0.26 -0.6
438,687 + AMB_RS02090 0.42 -0.2
438,721 + AMB_RS02090 0.49 -0.7
438,722 - AMB_RS02090 0.49 -4.2
438,770 + AMB_RS02090 0.60 +0.5
438,770 + AMB_RS02090 0.60 -0.7
438,770 + AMB_RS02090 0.60 -0.8
438,770 + AMB_RS02090 0.60 +0.6
438,770 + AMB_RS02090 0.60 -0.2
438,770 + AMB_RS02090 0.60 -1.5
438,771 - AMB_RS02090 0.60 -0.9
438,771 - AMB_RS02090 0.60 +0.2
438,771 - AMB_RS02090 0.60 -0.3
438,771 - AMB_RS02090 0.60 -1.6
438,771 - AMB_RS02090 0.60 -0.3
438,771 - AMB_RS02090 0.60 -1.0
438,796 - AMB_RS02090 0.66 -2.2
438,943 + -1.5
438,943 + +1.1
438,943 + +0.4
438,944 - -0.9
438,944 - -0.1
438,945 + -1.5
438,945 + +0.2
438,945 + +0.0
438,945 + +0.2
438,945 + -0.4
438,945 + +0.1
438,945 + -0.6
438,946 - -1.4
438,946 - -3.2
438,969 + -0.2
438,969 + -0.3
439,056 + AMB_RS02095 0.22 +0.3
439,056 + AMB_RS02095 0.22 +0.1
439,057 - AMB_RS02095 0.22 -0.3
439,057 - AMB_RS02095 0.22 +0.2
439,057 - AMB_RS02095 0.22 -0.9
439,065 - AMB_RS02095 0.24 -0.4
439,065 - AMB_RS02095 0.24 -0.5
439,065 - AMB_RS02095 0.24 -2.8
439,096 - AMB_RS02095 0.31 -0.5
439,096 - AMB_RS02095 0.31 -1.6
439,289 - AMB_RS02095 0.75 +0.6
439,289 - AMB_RS02095 0.75 -0.2
439,362 + -3.2
439,362 + -2.7
439,363 - +3.6
439,411 - -0.1
439,411 - +0.5
439,411 - -0.0
439,411 - -0.1
439,411 - -0.5
439,411 - +0.1
439,671 + AMB_RS02100 0.80 -0.3
439,671 + AMB_RS02100 0.80 -1.6
439,671 + AMB_RS02100 0.80 -0.2
439,671 + AMB_RS02100 0.80 -0.7
439,672 - AMB_RS02100 0.80 +0.6
439,725 - -2.9
439,725 - -0.3
439,733 + +0.6
439,733 + +0.2
439,733 + +0.9
439,733 + +0.6
439,733 + -0.4
439,733 + +0.7
439,734 - +0.1
439,734 - -0.1
439,741 - -1.5
439,741 - -1.4
439,815 + -0.3

Or see this region's nucleotide sequence