Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01760

Experiment: 30_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01750 and AMB_RS01755 overlap by 4 nucleotidesAMB_RS01755 and AMB_RS01760 overlap by 4 nucleotidesAMB_RS01760 and AMB_RS23100 are separated by 17 nucleotidesAMB_RS23100 and AMB_RS01770 overlap by 1 nucleotidesAMB_RS01770 and AMB_RS01775 overlap by 1 nucleotides AMB_RS01750: AMB_RS01750 - recombinase family protein, at 382,331 to 383,662 _RS01750 AMB_RS01755: AMB_RS01755 - DUF2924 domain-containing protein, at 383,659 to 384,108 _RS01755 AMB_RS01760: AMB_RS01760 - hypothetical protein, at 384,105 to 384,362 _RS01760 AMB_RS23100: AMB_RS23100 - hypothetical protein, at 384,380 to 385,057 _RS23100 AMB_RS01770: AMB_RS01770 - XRE family transcriptional regulator, at 385,057 to 385,338 _RS01770 AMB_RS01775: AMB_RS01775 - hypothetical protein, at 385,338 to 386,096 _RS01775 Position (kb) 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.151 kb on + strand, within AMB_RS01750at 383.152 kb on - strand, within AMB_RS01750at 383.152 kb on - strand, within AMB_RS01750at 383.403 kb on + strand, within AMB_RS01750at 383.404 kb on - strand, within AMB_RS01750at 383.502 kb on + strand, within AMB_RS01750at 383.502 kb on + strand, within AMB_RS01750at 383.502 kb on + strand, within AMB_RS01750at 383.502 kb on + strand, within AMB_RS01750at 383.503 kb on - strand, within AMB_RS01750at 383.550 kb on + strandat 383.550 kb on + strandat 383.550 kb on + strandat 383.551 kb on - strandat 383.551 kb on - strandat 383.551 kb on - strandat 383.628 kb on + strandat 383.628 kb on + strandat 383.628 kb on + strandat 383.628 kb on + strandat 383.628 kb on + strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 383.629 kb on - strandat 384.005 kb on + strand, within AMB_RS01755at 384.005 kb on + strand, within AMB_RS01755at 384.110 kb on + strandat 384.110 kb on + strandat 384.110 kb on + strandat 384.196 kb on - strand, within AMB_RS01760at 384.196 kb on - strand, within AMB_RS01760at 384.196 kb on - strand, within AMB_RS01760at 384.333 kb on + strand, within AMB_RS01760at 384.333 kb on + strand, within AMB_RS01760at 384.334 kb on - strand, within AMB_RS01760at 384.345 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.382 kb on - strandat 384.382 kb on - strandat 384.541 kb on + strand, within AMB_RS23100at 384.541 kb on + strand, within AMB_RS23100at 384.541 kb on + strand, within AMB_RS23100at 384.542 kb on - strand, within AMB_RS23100at 384.542 kb on - strand, within AMB_RS23100at 384.579 kb on + strand, within AMB_RS23100at 384.580 kb on - strand, within AMB_RS23100at 384.580 kb on - strand, within AMB_RS23100at 384.634 kb on + strand, within AMB_RS23100at 384.635 kb on - strand, within AMB_RS23100at 384.635 kb on - strand, within AMB_RS23100at 384.655 kb on + strand, within AMB_RS23100at 384.655 kb on + strand, within AMB_RS23100at 384.656 kb on - strand, within AMB_RS23100at 384.656 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.806 kb on - strand, within AMB_RS23100at 384.828 kb on + strand, within AMB_RS23100at 384.829 kb on - strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.247 kb on + strand, within AMB_RS01770at 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
remove
383,151 + AMB_RS01750 0.62 -2.1
383,152 - AMB_RS01750 0.62 +0.3
383,152 - AMB_RS01750 0.62 -0.6
383,403 + AMB_RS01750 0.80 +0.1
383,404 - AMB_RS01750 0.81 -0.0
383,502 + AMB_RS01750 0.88 +0.1
383,502 + AMB_RS01750 0.88 -0.1
383,502 + AMB_RS01750 0.88 -0.1
383,502 + AMB_RS01750 0.88 -0.1
383,503 - AMB_RS01750 0.88 +0.3
383,550 + +0.9
383,550 + -1.1
383,550 + +0.4
383,551 - -0.7
383,551 - -0.7
383,551 - -1.4
383,628 + -3.3
383,628 + -0.9
383,628 + -2.0
383,628 + -3.3
383,628 + +0.6
383,629 - -0.9
383,629 - -1.4
383,629 - -3.7
383,629 - +0.5
383,629 - +1.0
383,629 - -1.2
383,629 - +1.4
383,629 - +0.2
383,629 - -0.5
383,629 - -2.2
383,629 - -0.6
384,005 + AMB_RS01755 0.77 -0.3
384,005 + AMB_RS01755 0.77 +0.9
384,110 + -0.7
384,110 + -3.2
384,110 + +3.4
384,196 - AMB_RS01760 0.35 +0.0
384,196 - AMB_RS01760 0.35 +2.0
384,196 - AMB_RS01760 0.35 -3.1
384,333 + AMB_RS01760 0.88 +0.6
384,333 + AMB_RS01760 0.88 -0.4
384,334 - AMB_RS01760 0.89 -2.1
384,345 + -0.1
384,381 + -2.6
384,381 + -0.6
384,381 + +0.2
384,381 + +0.7
384,382 - +0.2
384,382 - +0.7
384,541 + AMB_RS23100 0.24 +0.6
384,541 + AMB_RS23100 0.24 -0.4
384,541 + AMB_RS23100 0.24 -1.4
384,542 - AMB_RS23100 0.24 -0.8
384,542 - AMB_RS23100 0.24 -0.8
384,579 + AMB_RS23100 0.29 -2.3
384,580 - AMB_RS23100 0.29 -0.2
384,580 - AMB_RS23100 0.29 +0.6
384,634 + AMB_RS23100 0.37 -0.3
384,635 - AMB_RS23100 0.38 +0.2
384,635 - AMB_RS23100 0.38 +0.2
384,655 + AMB_RS23100 0.41 +0.1
384,655 + AMB_RS23100 0.41 +1.2
384,656 - AMB_RS23100 0.41 -0.1
384,656 - AMB_RS23100 0.41 +0.6
384,754 - AMB_RS23100 0.55 +0.0
384,754 - AMB_RS23100 0.55 -0.9
384,754 - AMB_RS23100 0.55 -0.9
384,806 - AMB_RS23100 0.63 -0.5
384,828 + AMB_RS23100 0.66 -1.2
384,829 - AMB_RS23100 0.66 -0.7
384,903 + AMB_RS23100 0.77 +0.2
384,903 + AMB_RS23100 0.77 -0.1
384,903 + AMB_RS23100 0.77 +3.3
385,029 + -2.7
385,029 + -2.2
385,029 + -0.3
385,029 + +0.2
385,029 + -0.5
385,030 - -0.5
385,030 - +0.0
385,030 - +0.2
385,030 - -3.5
385,030 - -0.0
385,030 - -0.7
385,247 + AMB_RS01770 0.67 -0.8
385,322 + +0.2
385,322 + -0.2
385,322 + +0.6
385,322 + +3.7
385,322 + -0.2
385,322 + -0.6
385,322 + -0.2
385,322 + -2.0
385,322 + -0.1
385,323 - +0.4
385,323 - +0.1
385,323 - +0.1
385,323 - -2.9
385,323 - -2.6
385,323 - -1.9

Or see this region's nucleotide sequence