Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01335 and AMB_RS01340 are separated by 1 nucleotides AMB_RS01340 and AMB_RS01345 are separated by 51 nucleotides
AMB_RS01335: AMB_RS01335 - methyl-accepting chemotaxis protein, at 294,728 to 296,539
_RS01335
AMB_RS01340: AMB_RS01340 - hypothetical protein, at 296,541 to 297,038
_RS01340
AMB_RS01345: AMB_RS01345 - glycosyltransferase family 1 protein, at 297,090 to 298,133
_RS01345
Position (kb) 296
297
298 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 296.302 kb on + strand, within AMB_RS01335 at 296.543 kb on - strand at 296.611 kb on + strand, within AMB_RS01340 at 296.612 kb on - strand, within AMB_RS01340 at 296.612 kb on - strand, within AMB_RS01340 at 296.680 kb on + strand, within AMB_RS01340 at 296.680 kb on + strand, within AMB_RS01340 at 296.680 kb on + strand, within AMB_RS01340 at 296.680 kb on + strand, within AMB_RS01340 at 296.680 kb on + strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.681 kb on - strand, within AMB_RS01340 at 296.801 kb on + strand, within AMB_RS01340 at 296.801 kb on + strand, within AMB_RS01340 at 296.802 kb on - strand, within AMB_RS01340 at 296.802 kb on - strand, within AMB_RS01340 at 296.863 kb on + strand, within AMB_RS01340 at 296.863 kb on + strand, within AMB_RS01340 at 296.864 kb on - strand, within AMB_RS01340 at 296.864 kb on - strand, within AMB_RS01340 at 296.864 kb on - strand, within AMB_RS01340 at 296.864 kb on - strand, within AMB_RS01340 at 296.864 kb on - strand, within AMB_RS01340 at 296.914 kb on + strand, within AMB_RS01340 at 296.914 kb on + strand, within AMB_RS01340 at 296.915 kb on - strand, within AMB_RS01340 at 296.956 kb on + strand, within AMB_RS01340 at 296.957 kb on - strand, within AMB_RS01340 at 297.086 kb on + strand at 297.087 kb on - strand at 297.132 kb on + strand at 297.133 kb on - strand at 297.302 kb on - strand, within AMB_RS01345 at 297.398 kb on - strand, within AMB_RS01345 at 297.671 kb on + strand, within AMB_RS01345 at 297.766 kb on + strand, within AMB_RS01345 at 297.766 kb on + strand, within AMB_RS01345 at 297.767 kb on - strand, within AMB_RS01345 at 297.767 kb on - strand, within AMB_RS01345 at 297.805 kb on + strand, within AMB_RS01345 at 297.806 kb on - strand, within AMB_RS01345 at 297.806 kb on - strand, within AMB_RS01345 at 297.826 kb on + strand, within AMB_RS01345 at 297.826 kb on + strand, within AMB_RS01345 at 297.826 kb on + strand, within AMB_RS01345 at 297.827 kb on - strand, within AMB_RS01345
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 296,302 + AMB_RS01335 0.87 -1.1 296,543 - -0.1 296,611 + AMB_RS01340 0.14 -0.0 296,612 - AMB_RS01340 0.14 +0.1 296,612 - AMB_RS01340 0.14 -1.5 296,680 + AMB_RS01340 0.28 -0.2 296,680 + AMB_RS01340 0.28 -2.0 296,680 + AMB_RS01340 0.28 -0.1 296,680 + AMB_RS01340 0.28 +0.4 296,680 + AMB_RS01340 0.28 +0.5 296,681 - AMB_RS01340 0.28 -0.1 296,681 - AMB_RS01340 0.28 -0.1 296,681 - AMB_RS01340 0.28 -0.5 296,681 - AMB_RS01340 0.28 -0.3 296,681 - AMB_RS01340 0.28 -0.3 296,681 - AMB_RS01340 0.28 +0.7 296,681 - AMB_RS01340 0.28 -2.2 296,681 - AMB_RS01340 0.28 -0.4 296,801 + AMB_RS01340 0.52 -1.5 296,801 + AMB_RS01340 0.52 -0.3 296,802 - AMB_RS01340 0.52 -0.0 296,802 - AMB_RS01340 0.52 +1.1 296,863 + AMB_RS01340 0.65 +0.6 296,863 + AMB_RS01340 0.65 -0.6 296,864 - AMB_RS01340 0.65 -0.1 296,864 - AMB_RS01340 0.65 -0.9 296,864 - AMB_RS01340 0.65 -2.4 296,864 - AMB_RS01340 0.65 -1.2 296,864 - AMB_RS01340 0.65 -1.7 296,914 + AMB_RS01340 0.75 -1.0 296,914 + AMB_RS01340 0.75 -0.5 296,915 - AMB_RS01340 0.75 -2.4 296,956 + AMB_RS01340 0.83 -4.0 296,957 - AMB_RS01340 0.84 +0.4 297,086 + -0.7 297,087 - -1.5 297,132 + -2.6 297,133 - -0.2 297,302 - AMB_RS01345 0.20 -0.6 297,398 - AMB_RS01345 0.30 -1.4 297,671 + AMB_RS01345 0.56 +0.1 297,766 + AMB_RS01345 0.65 -0.1 297,766 + AMB_RS01345 0.65 +0.5 297,767 - AMB_RS01345 0.65 +0.9 297,767 - AMB_RS01345 0.65 +1.6 297,805 + AMB_RS01345 0.68 -1.0 297,806 - AMB_RS01345 0.69 +1.2 297,806 - AMB_RS01345 0.69 -0.2 297,826 + AMB_RS01345 0.70 -0.4 297,826 + AMB_RS01345 0.70 +0.2 297,826 + AMB_RS01345 0.70 +0.9 297,827 - AMB_RS01345 0.71 -0.5
Or see this region's nucleotide sequence