Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01225

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01220 and AMB_RS01225 overlap by 44 nucleotidesAMB_RS01225 and AMB_RS01230 overlap by 1 nucleotidesAMB_RS01230 and AMB_RS01235 overlap by 4 nucleotides AMB_RS01220: AMB_RS01220 - hypothetical protein, at 272,248 to 273,783 _RS01220 AMB_RS01225: AMB_RS01225 - tRNA pseudouridine(38-40) synthase TruA, at 273,740 to 274,510 _RS01225 AMB_RS01230: AMB_RS01230 - methionyl-tRNA formyltransferase, at 274,510 to 275,427 _RS01230 AMB_RS01235: AMB_RS01235 - peptide deformylase, at 275,424 to 275,936 _RS01235 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.955 kb on + strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.355 kb on + strand, within AMB_RS01220at 273.355 kb on + strand, within AMB_RS01220at 273.356 kb on - strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.637 kb on - strandat 273.637 kb on - strandat 273.724 kb on + strandat 273.724 kb on + strandat 273.900 kb on - strand, within AMB_RS01225at 274.179 kb on + strand, within AMB_RS01225at 274.179 kb on + strand, within AMB_RS01225at 274.269 kb on + strand, within AMB_RS01225at 274.269 kb on + strand, within AMB_RS01225at 274.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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272,800 + AMB_RS01220 0.36 -1.3
272,800 + AMB_RS01220 0.36 -0.6
272,800 + AMB_RS01220 0.36 -0.7
272,800 + AMB_RS01220 0.36 -0.4
272,950 + AMB_RS01220 0.46 +1.0
272,950 + AMB_RS01220 0.46 +0.5
272,951 - AMB_RS01220 0.46 +0.8
272,951 - AMB_RS01220 0.46 -0.6
272,951 - AMB_RS01220 0.46 -2.7
272,951 - AMB_RS01220 0.46 -0.7
272,955 + AMB_RS01220 0.46 -0.5
272,956 - AMB_RS01220 0.46 -2.8
272,956 - AMB_RS01220 0.46 +0.0
273,175 + AMB_RS01220 0.60 -2.4
273,175 + AMB_RS01220 0.60 +0.7
273,175 + AMB_RS01220 0.60 +0.1
273,175 + AMB_RS01220 0.60 -1.4
273,175 + AMB_RS01220 0.60 +0.6
273,176 - AMB_RS01220 0.60 -1.8
273,176 - AMB_RS01220 0.60 -0.4
273,176 - AMB_RS01220 0.60 -0.7
273,176 - AMB_RS01220 0.60 -0.3
273,176 - AMB_RS01220 0.60 -1.4
273,176 - AMB_RS01220 0.60 -0.4
273,176 - AMB_RS01220 0.60 +0.6
273,176 - AMB_RS01220 0.60 +0.3
273,176 - AMB_RS01220 0.60 -0.0
273,253 + AMB_RS01220 0.65 +0.5
273,253 + AMB_RS01220 0.65 +0.6
273,253 + AMB_RS01220 0.65 +2.3
273,253 + AMB_RS01220 0.65 +0.6
273,253 + AMB_RS01220 0.65 -0.6
273,254 - AMB_RS01220 0.65 +0.5
273,254 - AMB_RS01220 0.65 +0.1
273,254 - AMB_RS01220 0.65 -0.1
273,254 - AMB_RS01220 0.65 +1.1
273,254 - AMB_RS01220 0.65 -0.8
273,254 - AMB_RS01220 0.65 -1.0
273,254 - AMB_RS01220 0.65 -0.6
273,355 + AMB_RS01220 0.72 -0.0
273,355 + AMB_RS01220 0.72 +0.6
273,356 - AMB_RS01220 0.72 +0.2
273,442 + AMB_RS01220 0.78 -0.4
273,442 + AMB_RS01220 0.78 -0.6
273,442 + AMB_RS01220 0.78 -1.0
273,443 - AMB_RS01220 0.78 -0.9
273,443 - AMB_RS01220 0.78 -2.0
273,443 - AMB_RS01220 0.78 -0.2
273,443 - AMB_RS01220 0.78 +0.9
273,443 - AMB_RS01220 0.78 -0.5
273,517 + AMB_RS01220 0.83 -0.1
273,517 + AMB_RS01220 0.83 -3.6
273,517 + AMB_RS01220 0.83 -0.3
273,517 + AMB_RS01220 0.83 +0.8
273,517 + AMB_RS01220 0.83 +0.4
273,517 + AMB_RS01220 0.83 +0.2
273,517 + AMB_RS01220 0.83 -1.2
273,517 + AMB_RS01220 0.83 +0.1
273,517 + AMB_RS01220 0.83 -0.7
273,518 - AMB_RS01220 0.83 -0.9
273,518 - AMB_RS01220 0.83 -1.3
273,518 - AMB_RS01220 0.83 -1.4
273,518 - AMB_RS01220 0.83 -2.2
273,518 - AMB_RS01220 0.83 -0.3
273,518 - AMB_RS01220 0.83 +0.6
273,518 - AMB_RS01220 0.83 +0.1
273,518 - AMB_RS01220 0.83 -0.5
273,518 - AMB_RS01220 0.83 +0.8
273,637 - -0.5
273,637 - -1.0
273,724 + -0.5
273,724 + +0.6
273,900 - AMB_RS01225 0.21 +2.6
274,179 + AMB_RS01225 0.57 +1.1
274,179 + AMB_RS01225 0.57 -0.8
274,269 + AMB_RS01225 0.69 -0.9
274,269 + AMB_RS01225 0.69 -0.7
274,511 + -0.1

Or see this region's nucleotide sequence