Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01140

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01130 and AMB_RS01135 are separated by 77 nucleotidesAMB_RS01135 and AMB_RS01140 overlap by 40 nucleotidesAMB_RS01140 and AMB_RS01145 are separated by 110 nucleotidesAMB_RS01145 and AMB_RS01150 are separated by 48 nucleotides AMB_RS01130: AMB_RS01130 - hypothetical protein, at 254,144 to 254,941 _RS01130 AMB_RS01135: AMB_RS01135 - hypothetical protein, at 255,019 to 255,207 _RS01135 AMB_RS01140: AMB_RS01140 - LysR family transcriptional regulator, at 255,168 to 256,097 _RS01140 AMB_RS01145: AMB_RS01145 - dioxygenase, at 256,208 to 256,975 _RS01145 AMB_RS01150: AMB_RS01150 - hemerythrin, at 257,024 to 257,431 _RS01150 Position (kb) 255 256 257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 254.358 kb on + strand, within AMB_RS01130at 254.602 kb on - strand, within AMB_RS01130at 254.602 kb on - strand, within AMB_RS01130at 254.619 kb on + strand, within AMB_RS01130at 254.619 kb on + strand, within AMB_RS01130at 254.658 kb on + strand, within AMB_RS01130at 254.658 kb on + strand, within AMB_RS01130at 254.659 kb on - strand, within AMB_RS01130at 254.820 kb on + strand, within AMB_RS01130at 254.826 kb on + strand, within AMB_RS01130at 254.826 kb on + strand, within AMB_RS01130at 254.826 kb on + strand, within AMB_RS01130at 254.826 kb on + strand, within AMB_RS01130at 254.827 kb on - strand, within AMB_RS01130at 254.914 kb on + strandat 254.914 kb on + strandat 254.915 kb on - strandat 254.965 kb on + strandat 254.965 kb on + strandat 254.966 kb on - strandat 254.966 kb on - strandat 254.967 kb on - strandat 255.026 kb on + strandat 255.026 kb on + strandat 255.027 kb on - strandat 255.027 kb on - strandat 255.033 kb on + strandat 255.034 kb on - strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.205 kb on + strandat 255.206 kb on - strandat 255.206 kb on - strandat 255.283 kb on + strand, within AMB_RS01140at 255.284 kb on - strand, within AMB_RS01140at 255.316 kb on + strand, within AMB_RS01140at 255.316 kb on + strand, within AMB_RS01140at 255.316 kb on + strand, within AMB_RS01140at 255.316 kb on + strand, within AMB_RS01140at 255.316 kb on + strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.317 kb on - strand, within AMB_RS01140at 255.567 kb on - strand, within AMB_RS01140at 255.583 kb on + strand, within AMB_RS01140at 255.584 kb on - strand, within AMB_RS01140at 255.901 kb on + strand, within AMB_RS01140at 256.124 kb on + strandat 256.403 kb on + strand, within AMB_RS01145at 256.404 kb on - strand, within AMB_RS01145at 256.404 kb on - strand, within AMB_RS01145at 256.404 kb on - strand, within AMB_RS01145at 256.404 kb on - strand, within AMB_RS01145at 256.404 kb on - strand, within AMB_RS01145at 256.424 kb on + strand, within AMB_RS01145at 256.436 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.697 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.815 kb on - strand, within AMB_RS01145at 256.961 kb on + strandat 256.962 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 257.007 kb on + strandat 257.007 kb on + strandat 257.008 kb on - strandat 257.030 kb on + strandat 257.030 kb on + strandat 257.031 kb on - strandat 257.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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254,358 + AMB_RS01130 0.27 +0.5
254,602 - AMB_RS01130 0.57 +0.5
254,602 - AMB_RS01130 0.57 -0.6
254,619 + AMB_RS01130 0.60 +0.1
254,619 + AMB_RS01130 0.60 +0.7
254,658 + AMB_RS01130 0.64 +0.6
254,658 + AMB_RS01130 0.64 +2.3
254,659 - AMB_RS01130 0.65 -0.4
254,820 + AMB_RS01130 0.85 +0.4
254,826 + AMB_RS01130 0.85 -0.1
254,826 + AMB_RS01130 0.85 +0.3
254,826 + AMB_RS01130 0.85 +0.5
254,826 + AMB_RS01130 0.85 -0.7
254,827 - AMB_RS01130 0.86 -0.8
254,914 + -0.3
254,914 + -0.9
254,915 - -0.0
254,965 + -0.2
254,965 + -0.2
254,966 - -1.6
254,966 - +0.6
254,967 - -1.3
255,026 + -0.1
255,026 + -1.2
255,027 - -1.7
255,027 - -0.9
255,033 + -1.0
255,034 - +0.4
255,205 + +0.7
255,205 + -0.1
255,205 + +0.4
255,205 + +0.1
255,205 + -1.4
255,205 + +0.3
255,205 + +0.2
255,205 + -1.0
255,206 - +0.2
255,206 - +0.0
255,283 + AMB_RS01140 0.12 +0.9
255,284 - AMB_RS01140 0.12 +0.3
255,316 + AMB_RS01140 0.16 +0.6
255,316 + AMB_RS01140 0.16 -0.8
255,316 + AMB_RS01140 0.16 +2.2
255,316 + AMB_RS01140 0.16 +0.7
255,316 + AMB_RS01140 0.16 +1.2
255,317 - AMB_RS01140 0.16 +0.1
255,317 - AMB_RS01140 0.16 -0.4
255,317 - AMB_RS01140 0.16 -3.8
255,317 - AMB_RS01140 0.16 -1.7
255,317 - AMB_RS01140 0.16 -2.7
255,317 - AMB_RS01140 0.16 -2.7
255,317 - AMB_RS01140 0.16 -2.1
255,317 - AMB_RS01140 0.16 +0.9
255,567 - AMB_RS01140 0.43 -0.1
255,583 + AMB_RS01140 0.45 -0.2
255,584 - AMB_RS01140 0.45 +1.0
255,901 + AMB_RS01140 0.79 -0.6
256,124 + -0.9
256,403 + AMB_RS01145 0.25 +1.9
256,404 - AMB_RS01145 0.26 +0.4
256,404 - AMB_RS01145 0.26 -2.9
256,404 - AMB_RS01145 0.26 -0.1
256,404 - AMB_RS01145 0.26 -0.4
256,404 - AMB_RS01145 0.26 +0.1
256,424 + AMB_RS01145 0.28 -0.1
256,436 + AMB_RS01145 0.30 -0.9
256,622 + AMB_RS01145 0.54 -1.4
256,622 + AMB_RS01145 0.54 -1.4
256,622 + AMB_RS01145 0.54 +0.6
256,622 + AMB_RS01145 0.54 -0.3
256,622 + AMB_RS01145 0.54 +2.9
256,623 - AMB_RS01145 0.54 -1.2
256,623 - AMB_RS01145 0.54 -1.4
256,623 - AMB_RS01145 0.54 +0.6
256,697 - AMB_RS01145 0.64 +0.2
256,710 - AMB_RS01145 0.65 +0.3
256,710 - AMB_RS01145 0.65 +0.1
256,710 - AMB_RS01145 0.65 -2.2
256,710 - AMB_RS01145 0.65 +0.0
256,815 - AMB_RS01145 0.79 -0.9
256,961 + +1.3
256,962 - -0.1
256,991 + +1.2
256,991 + -0.9
256,991 + +1.0
256,991 + +0.6
256,992 - -3.2
256,992 - -2.4
256,992 - -1.7
256,992 - +0.8
256,992 - -0.0
257,007 + -1.0
257,007 + -1.2
257,008 - -0.5
257,030 + -0.5
257,030 + +0.8
257,031 - -0.1
257,031 - +0.4

Or see this region's nucleotide sequence