Experiment: 30_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00850 and AMB_RS00855 are separated by 220 nucleotides AMB_RS00855 and AMB_RS00860 are separated by 31 nucleotides
AMB_RS00850: AMB_RS00850 - LD-carboxypeptidase, at 190,174 to 191,019
_RS00850
AMB_RS00855: AMB_RS00855 - helix-turn-helix domain-containing protein, at 191,240 to 192,112
_RS00855
AMB_RS00860: AMB_RS00860 - NADH-quinone oxidoreductase subunit F, at 192,144 to 193,736
_RS00860
Position (kb) 191
192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 190.486 kb on + strand, within AMB_RS00850 at 190.528 kb on + strand, within AMB_RS00850 at 190.689 kb on + strand, within AMB_RS00850 at 190.690 kb on - strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.783 kb on + strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.949 kb on - strand at 191.364 kb on - strand, within AMB_RS00855 at 191.407 kb on + strand, within AMB_RS00855 at 191.408 kb on - strand, within AMB_RS00855 at 191.438 kb on - strand, within AMB_RS00855 at 191.546 kb on + strand, within AMB_RS00855 at 191.546 kb on + strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.911 kb on + strand, within AMB_RS00855 at 191.912 kb on - strand, within AMB_RS00855 at 191.912 kb on - strand, within AMB_RS00855 at 192.133 kb on + strand at 192.300 kb on + strand at 192.301 kb on - strand at 192.301 kb on - strand at 192.376 kb on - strand, within AMB_RS00860 at 192.376 kb on - strand, within AMB_RS00860 at 192.376 kb on - strand, within AMB_RS00860 at 192.613 kb on - strand, within AMB_RS00860 at 192.613 kb on - strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.921 kb on + strand, within AMB_RS00860 at 192.922 kb on - strand, within AMB_RS00860 at 192.922 kb on - strand, within AMB_RS00860 at 192.922 kb on - strand, within AMB_RS00860 at 192.922 kb on - strand, within AMB_RS00860 at 192.927 kb on + strand, within AMB_RS00860 at 192.928 kb on - strand, within AMB_RS00860 at 192.942 kb on + strand, within AMB_RS00860 at 192.957 kb on - strand, within AMB_RS00860 at 192.957 kb on - strand, within AMB_RS00860 at 193.030 kb on - strand, within AMB_RS00860 at 193.030 kb on - strand, within AMB_RS00860 at 193.030 kb on - strand, within AMB_RS00860 at 193.030 kb on - strand, within AMB_RS00860 at 193.030 kb on - strand, within AMB_RS00860 at 193.104 kb on + strand, within AMB_RS00860 at 193.104 kb on + strand, within AMB_RS00860 at 193.104 kb on + strand, within AMB_RS00860 at 193.105 kb on - strand, within AMB_RS00860 at 193.105 kb on - strand, within AMB_RS00860 at 193.105 kb on - strand, within AMB_RS00860
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_2 remove 190,486 + AMB_RS00850 0.37 -0.0 190,528 + AMB_RS00850 0.42 +0.0 190,689 + AMB_RS00850 0.61 +0.0 190,690 - AMB_RS00850 0.61 -2.2 190,777 + AMB_RS00850 0.71 -2.2 190,777 + AMB_RS00850 0.71 +0.9 190,783 + AMB_RS00850 0.72 +0.7 190,784 - AMB_RS00850 0.72 +0.9 190,784 - AMB_RS00850 0.72 +0.9 190,784 - AMB_RS00850 0.72 -0.1 190,949 - +0.4 191,364 - AMB_RS00855 0.14 -1.6 191,407 + AMB_RS00855 0.19 -2.2 191,408 - AMB_RS00855 0.19 -0.2 191,438 - AMB_RS00855 0.23 -0.1 191,546 + AMB_RS00855 0.35 -1.0 191,546 + AMB_RS00855 0.35 -1.0 191,547 - AMB_RS00855 0.35 -1.7 191,547 - AMB_RS00855 0.35 -0.6 191,547 - AMB_RS00855 0.35 -4.1 191,911 + AMB_RS00855 0.77 -1.3 191,912 - AMB_RS00855 0.77 -0.7 191,912 - AMB_RS00855 0.77 -0.4 192,133 + -1.0 192,300 + -0.1 192,301 - +0.6 192,301 - -0.1 192,376 - AMB_RS00860 0.15 +0.6 192,376 - AMB_RS00860 0.15 +0.2 192,376 - AMB_RS00860 0.15 -1.4 192,613 - AMB_RS00860 0.29 -1.6 192,613 - AMB_RS00860 0.29 -0.4 192,921 + AMB_RS00860 0.49 -0.2 192,921 + AMB_RS00860 0.49 +0.3 192,921 + AMB_RS00860 0.49 +0.5 192,921 + AMB_RS00860 0.49 -0.1 192,921 + AMB_RS00860 0.49 -1.3 192,921 + AMB_RS00860 0.49 +0.4 192,921 + AMB_RS00860 0.49 -0.3 192,922 - AMB_RS00860 0.49 +3.2 192,922 - AMB_RS00860 0.49 -0.1 192,922 - AMB_RS00860 0.49 -0.5 192,922 - AMB_RS00860 0.49 +0.3 192,927 + AMB_RS00860 0.49 +0.4 192,928 - AMB_RS00860 0.49 -2.0 192,942 + AMB_RS00860 0.50 +0.5 192,957 - AMB_RS00860 0.51 +0.6 192,957 - AMB_RS00860 0.51 -1.2 193,030 - AMB_RS00860 0.56 +0.3 193,030 - AMB_RS00860 0.56 +0.1 193,030 - AMB_RS00860 0.56 -2.0 193,030 - AMB_RS00860 0.56 +0.6 193,030 - AMB_RS00860 0.56 -2.2 193,104 + AMB_RS00860 0.60 +0.7 193,104 + AMB_RS00860 0.60 -0.1 193,104 + AMB_RS00860 0.60 -0.7 193,105 - AMB_RS00860 0.60 -0.4 193,105 - AMB_RS00860 0.60 +0.0 193,105 - AMB_RS00860 0.60 -0.4
Or see this region's nucleotide sequence