Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00695

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00690 and AMB_RS00695 are separated by 27 nucleotidesAMB_RS00695 and AMB_RS00700 overlap by 23 nucleotides AMB_RS00690: AMB_RS00690 - hypothetical protein, at 156,842 to 158,740 _RS00690 AMB_RS00695: AMB_RS00695 - gfo/Idh/MocA family oxidoreductase, at 158,768 to 159,712 _RS00695 AMB_RS00700: AMB_RS00700 - nucleoside-diphosphate sugar epimerase, at 159,690 to 160,751 _RS00700 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 158.739 kb on - strandat 158.739 kb on - strandat 158.747 kb on + strandat 158.747 kb on + strandat 158.747 kb on + strandat 158.747 kb on + strandat 158.747 kb on + strandat 158.748 kb on - strandat 158.748 kb on - strandat 158.748 kb on - strandat 158.748 kb on - strandat 158.748 kb on - strandat 158.752 kb on - strandat 158.752 kb on - strandat 158.752 kb on - strandat 158.763 kb on + strandat 158.770 kb on - strandat 159.050 kb on + strand, within AMB_RS00695at 159.334 kb on + strand, within AMB_RS00695at 159.334 kb on + strand, within AMB_RS00695at 159.529 kb on + strand, within AMB_RS00695at 159.640 kb on + strandat 159.642 kb on + strandat 159.704 kb on + strandat 159.706 kb on + strandat 159.706 kb on + strandat 159.706 kb on + strandat 159.707 kb on - strandat 159.707 kb on - strandat 159.707 kb on - strandat 159.707 kb on - strandat 159.832 kb on + strand, within AMB_RS00700at 159.938 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.040 kb on - strand, within AMB_RS00700at 160.083 kb on - strand, within AMB_RS00700at 160.096 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.255 kb on + strand, within AMB_RS00700at 160.255 kb on + strand, within AMB_RS00700at 160.411 kb on + strand, within AMB_RS00700at 160.411 kb on + strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.451 kb on - strand, within AMB_RS00700at 160.451 kb on - strand, within AMB_RS00700at 160.516 kb on + strand, within AMB_RS00700at 160.516 kb on + strand, within AMB_RS00700at 160.577 kb on + strand, within AMB_RS00700at 160.630 kb on + strand, within AMB_RS00700

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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158,739 - -0.1
158,739 - +0.7
158,747 + -0.2
158,747 + -0.1
158,747 + -2.4
158,747 + +0.2
158,747 + -0.4
158,748 - +1.8
158,748 - +1.8
158,748 - +0.3
158,748 - +0.0
158,748 - +0.2
158,752 - -0.6
158,752 - +0.1
158,752 - +0.6
158,763 + -0.4
158,770 - +0.3
159,050 + AMB_RS00695 0.30 -0.4
159,334 + AMB_RS00695 0.60 -0.3
159,334 + AMB_RS00695 0.60 +0.0
159,529 + AMB_RS00695 0.81 +1.3
159,640 + -0.6
159,642 + -2.1
159,704 + -3.6
159,706 + -0.2
159,706 + -2.2
159,706 + -3.1
159,707 - -0.1
159,707 - -0.9
159,707 - -0.7
159,707 - +0.1
159,832 + AMB_RS00700 0.13 -0.4
159,938 + AMB_RS00700 0.23 -1.6
159,943 + AMB_RS00700 0.24 +0.3
159,943 + AMB_RS00700 0.24 +0.5
159,943 + AMB_RS00700 0.24 -1.0
159,943 + AMB_RS00700 0.24 -0.9
159,943 + AMB_RS00700 0.24 +0.7
159,943 + AMB_RS00700 0.24 -0.2
159,944 - AMB_RS00700 0.24 -2.5
159,944 - AMB_RS00700 0.24 +0.2
159,944 - AMB_RS00700 0.24 -4.3
159,944 - AMB_RS00700 0.24 -2.9
159,944 - AMB_RS00700 0.24 -3.6
159,944 - AMB_RS00700 0.24 -0.7
160,006 + AMB_RS00700 0.30 +1.2
160,006 + AMB_RS00700 0.30 +2.0
160,006 + AMB_RS00700 0.30 +0.2
160,006 + AMB_RS00700 0.30 +0.4
160,006 + AMB_RS00700 0.30 +1.8
160,007 - AMB_RS00700 0.30 -1.4
160,007 - AMB_RS00700 0.30 -3.2
160,007 - AMB_RS00700 0.30 -0.9
160,007 - AMB_RS00700 0.30 -2.3
160,007 - AMB_RS00700 0.30 -0.3
160,007 - AMB_RS00700 0.30 -1.9
160,007 - AMB_RS00700 0.30 -0.2
160,007 - AMB_RS00700 0.30 +0.2
160,040 - AMB_RS00700 0.33 -2.4
160,083 - AMB_RS00700 0.37 +0.8
160,096 + AMB_RS00700 0.38 -0.2
160,180 + AMB_RS00700 0.46 -0.1
160,180 + AMB_RS00700 0.46 +0.4
160,180 + AMB_RS00700 0.46 -0.4
160,180 + AMB_RS00700 0.46 -1.1
160,180 + AMB_RS00700 0.46 -0.7
160,180 + AMB_RS00700 0.46 -0.9
160,180 + AMB_RS00700 0.46 +0.5
160,180 + AMB_RS00700 0.46 +0.0
160,180 + AMB_RS00700 0.46 -2.1
160,181 - AMB_RS00700 0.46 +0.1
160,181 - AMB_RS00700 0.46 -0.3
160,181 - AMB_RS00700 0.46 -0.1
160,181 - AMB_RS00700 0.46 +1.9
160,181 - AMB_RS00700 0.46 -1.4
160,181 - AMB_RS00700 0.46 +0.9
160,216 + AMB_RS00700 0.50 +0.7
160,216 + AMB_RS00700 0.50 -1.7
160,216 + AMB_RS00700 0.50 +0.7
160,216 + AMB_RS00700 0.50 -2.2
160,216 + AMB_RS00700 0.50 +0.4
160,216 + AMB_RS00700 0.50 -0.6
160,217 - AMB_RS00700 0.50 +0.2
160,217 - AMB_RS00700 0.50 -1.1
160,217 - AMB_RS00700 0.50 +0.2
160,217 - AMB_RS00700 0.50 +0.6
160,217 - AMB_RS00700 0.50 -2.1
160,217 - AMB_RS00700 0.50 -0.2
160,217 - AMB_RS00700 0.50 -0.0
160,217 - AMB_RS00700 0.50 -0.0
160,255 + AMB_RS00700 0.53 +0.5
160,255 + AMB_RS00700 0.53 -1.2
160,411 + AMB_RS00700 0.68 -0.9
160,411 + AMB_RS00700 0.68 -2.4
160,412 - AMB_RS00700 0.68 -0.4
160,412 - AMB_RS00700 0.68 -0.9
160,412 - AMB_RS00700 0.68 -0.3
160,414 + AMB_RS00700 0.68 +1.1
160,414 + AMB_RS00700 0.68 -1.9
160,414 + AMB_RS00700 0.68 -0.4
160,414 + AMB_RS00700 0.68 -1.4
160,415 - AMB_RS00700 0.68 -0.1
160,415 - AMB_RS00700 0.68 -1.0
160,415 - AMB_RS00700 0.68 -1.6
160,415 - AMB_RS00700 0.68 +0.0
160,415 - AMB_RS00700 0.68 -2.2
160,415 - AMB_RS00700 0.68 -1.0
160,415 - AMB_RS00700 0.68 +0.3
160,450 + AMB_RS00700 0.72 -1.5
160,450 + AMB_RS00700 0.72 -1.4
160,450 + AMB_RS00700 0.72 +0.1
160,451 - AMB_RS00700 0.72 -1.0
160,451 - AMB_RS00700 0.72 -3.0
160,516 + AMB_RS00700 0.78 -0.1
160,516 + AMB_RS00700 0.78 -0.2
160,577 + AMB_RS00700 0.84 +0.5
160,630 + AMB_RS00700 0.89 +2.6

Or see this region's nucleotide sequence